RNA id: XR_005639509.1


Basic Information

Item Value
RNA id XR_005639509.1
length 396
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id LOC120560778
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 29072941 ~ 29131216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCAGCTCTTGATGAACAGAAGTAAGATGAACAGAACGATGGCGAGGATGAAGGCCAGGACATCCAGGCTGTGATACTGGTACCAGCACCTCCGGAAGCAGAATGTGCAGGTCTTGATGAAGAGAAGTAAGATGAACAGAACGATGGCGAGGATGAAGGCCAGGACATCCAGGCTGTGATACTGATACCAGCACATGGAGAAGCAGAATGTGCAGGTCTTGATGAAGAGAAGTAAGATGAACAGAATAATGATGAGGAGAAGGGCCAAGACATCCAGGCTGTGATACTGGTACCAGGCCTCGGAGCTGTCGCAGCTGGATCCAGGCGAAGGGACTTCAGTGTCACTGGTCAGGGCCCACGGGTGTGGAGGGGAGTGCAGCTGCTCCATGTTTCCTC

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0021514 ventral spinal cord interneuron differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87618 lncRNA upstream 70761 28985613 ~ 29002180 (+) True G65473
TU87569 lncRNA upstream 225694 28845626 ~ 28847247 (+) True mboat4
TU87556 lncRNA upstream 256541 28816185 ~ 28816400 (+) True G65418
TU87555 lncRNA upstream 257465 28815254 ~ 28815476 (+) True G65417
TU87533 lncRNA upstream 306716 28766020 ~ 28766225 (+) True G65396
TU87928 lncRNA downstream 416233 29547449 ~ 29614880 (+) True G65710
TU87931 lncRNA downstream 457791 29589007 ~ 29591364 (+) True G65713
TU87952 lncRNA downstream 640423 29771639 ~ 29771864 (+) True G65734
TU87956 lncRNA downstream 680756 29811972 ~ 29812218 (+) True G65738
TU87965 lncRNA downstream 804677 29935893 ~ 29936995 (+) True G65745
XM_039802802.1 mRNA upstream 774 29060747 ~ 29072167 (+) False zgc:152968
XM_039802798.1 mRNA upstream 774 29062522 ~ 29072167 (+) True zgc:152968
XM_039802800.1 mRNA upstream 774 29062522 ~ 29072167 (+) False zgc:152968
XM_039802801.1 mRNA upstream 774 29062522 ~ 29072167 (+) False zgc:152968
XM_039802796.1 mRNA upstream 22717 29041940 ~ 29050224 (+) True LOC120560378
XM_039804594.1 mRNA downstream 72277 29203493 ~ 29214795 (+) False ptgs1
XM_039804595.1 mRNA downstream 72905 29204121 ~ 29214795 (+) True ptgs1
XM_039804596.1 mRNA downstream 72905 29204121 ~ 29214795 (+) False ptgs1
XM_039803949.1 mRNA downstream 89638 29220854 ~ 29223680 (+) True LOC120561007
XM_039804370.1 mRNA downstream 111506 29242722 ~ 29248901 (+) True pmpca
TU87117 other upstream 1771171 27205234 ~ 27301770 (+) True G65084
TU86927 other upstream 2414972 26645020 ~ 26657969 (+) False si:dkey-178e17.1
XR_005639500.1 other upstream 2430460 26614237 ~ 26642481 (+) False cltcl1
TU86791 other upstream 2576613 26494335 ~ 26496328 (+) False c6h22orf39
TU87830 other downstream 218908 29350124 ~ 29351753 (+) False ubac1
XR_005639517.1 other downstream 1055632 30186848 ~ 30212108 (+) False fbxo21
TU88038 other downstream 1115671 30246887 ~ 30250240 (+) False LOC120560820
TU88040 other downstream 1116723 30247939 ~ 30250268 (+) False LOC120560820
TU88039 other downstream 1116767 30247983 ~ 30251519 (+) True LOC120560820

Expression Profile