RNA id: XR_005639511.1



Basic Information


Item Value
RNA id XR_005639511.1
length 647
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id LOC120560789
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 19151533 ~ 19153584 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AGGGTTGACAAGGCGTGGCAATGGGCTCGTGGCTGACCAGGCGTGCTTCATTTACTGCATGTGATAGTTCCTAACATCATGGCCAACCTGGGCAGCGATACTGACAGATGGAGAATATTAGCGCTACAGAGGAGTTCATACTCAGCTGTTGCCAGGTTGGAGCTCTGTTAGTGCAGCAGGTCCAAAGAACAGTGCCCAGCACTTAAAAGCCAACAAAAGCCTTTTTGTGAGGCAGGGATCAAGTTGAAGAATGGACAAGGGGGTCCGCTACTCGAGCCTTCTGCCTCCCCTGAGCGGATAGTGTTGAGGACGTTTACACAGTTGTGAGTCTTGATGGTGCGGCGGGCAAACAGAGAGTCTGGGTCAGACTGAGAGGAGCCAGAGTTAATGCTGCATCTGGGACCCTGACTGACTTCCTGATGAATGGCAAATGTTGTAATTATCCTCGTTTCAGGACAAAGTCTTGGAAAAGCAGAGAGGTTTTTCTACATCAAATTACTATACTGTACATGCTTCTGTTTGATCACAGTAATTATGTATTACAATATATGGAGGGATTTTAGACTACTAGTAGTTCTcaaacggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU84161 lncRNA upstream 64671 19084934 ~ 19086862 (+) True G62836
TU84159 lncRNA upstream 64671 19085914 ~ 19086862 (+) False G62836
TU84163 lncRNA upstream 69879 19081080 ~ 19081654 (+) False tmem119a
TU84099 lncRNA upstream 168910 18966083 ~ 18982623 (+) True G62796
TU84019 lncRNA upstream 286726 18864575 ~ 18864807 (+) True G62755
TU84387 lncRNA downstream 395826 19549410 ~ 19554906 (+) True G63005
TU84391 lncRNA downstream 401799 19555383 ~ 19562350 (+) True G63007
TU84393 lncRNA downstream 401799 19555383 ~ 19562350 (+) False G63007
TU84401 lncRNA downstream 421977 19575561 ~ 19581840 (+) False G63015
TU84402 lncRNA downstream 421977 19575561 ~ 19633642 (+) True G63015
XM_039804624.1 mRNA upstream 29058 19120145 ~ 19122475 (+) True cmklr1
XM_039803828.1 mRNA upstream 51929 19087797 ~ 19099604 (+) True sart3
XM_039803826.1 mRNA upstream 69933 19076561 ~ 19081600 (+) True tmem119a
XM_039803821.1 mRNA upstream 77191 19029407 ~ 19074342 (+) True LOC120560931
XM_039802722.1 mRNA downstream 54195 19207779 ~ 19226925 (+) True limk2
XM_039802029.1 mRNA downstream 97592 19251176 ~ 19255928 (+) True tctn2
XM_039803344.1 mRNA downstream 103202 19256786 ~ 19269028 (+) True atp6v0a2b
XM_039803343.1 mRNA downstream 115952 19269536 ~ 19296674 (+) True dnah10
XM_039802286.1 mRNA downstream 144971 19298555 ~ 19357146 (+) False emid1
XR_005639481.1 other upstream 470372 18661157 ~ 18681161 (+) False acacb
TU83744 other upstream 731943 18416128 ~ 18419590 (+) False tbx5b
TU83742 other upstream 735527 18407387 ~ 18416006 (+) False tbx5b
TU83701 other upstream 820303 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 1142215 17998686 ~ 18009318 (+) False cmya5
TU84360 other downstream 281323 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 1324228 20477812 ~ 20488838 (+) False wdr31
XR_005639483.1 other downstream 1324228 20477812 ~ 20488838 (+) False wdr31
TU85087 other downstream 1522833 20676417 ~ 20677916 (+) True G63480
XR_005639510.1 other downstream 2435292 21588876 ~ 21598799 (+) False LOC120560787

Expression Profile