RNA id: XR_005639556.1


Basic Information

Item Value
RNA id XR_005639556.1
length 1781
lncRNA type inter_gene
GC content 0.43
exon number 5
gene id LOC120561019
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 2733540 ~ 2735823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAATTTTACGGTGCCCAGTGCATCAACTGGTGGCTGGTACCACGTCAATACAGGACTGAGCTGCTGCACCTGCCCTGTTGGCAAGACCGGCGCACCCTGCAAGCACCAGAGTGCAGTGGTGCAAACACTCCCACTAACAAGCACACCTCATCTCAGGAAGCTCTTCTATGGAACTGCTTCAGgaGGGACCACTCCAGATGACTGGTTTGAAAGCTTGATTTATGAACAGCCTGTGGAGCCAAAGTCAGTGTTGGAATCTCCTGCTCCAGCACCGAAGATCATCTCAGAGGACCACCGGTCCAGTGAAGAGGAGGCTGTTCACACATCAGCTGGGCCCAGCACAGGGACAGGGTCTTTGGAGAGGGAGCTGGATGGCATTTTTGGGATCCTCAAAAAAAGGACACAACATTCGAGGCACCTCTTCAGTCATTTGTGgacaattgaaaaaaacaatgaaaactgaCAGTGCTGTCCAGTCATCTTTGTTCTCCTATGGAAAGACAAGCTGTGTGCCTACTAGGATCCGTGCCACACCAAGTGGATTTCTGCAAACGACCACTAAGATTGGTGTGCGACCAACAGCGGTGTTGGAGctattttgcattttgtttattttaggcTTAAGTTATAGTctaatgtatttcttttctttgctaaaagttcttttgttttattttgcatttatgcttatttttttgtttacttatATTGTCATTTATTGGTCACGTGGTGCTAcgttaatttgcataaataggTCATGGTGGGAGGAGCCCGGCAGAGGCTGCGAGGGCATATGGGTTTTACCACAGTGTGAGAGAGGCAGCAGGAAATATCTGTGAGCTTGCTTATATGTGAAAATAAACCTCCTCGAACTCATCCTTTGCTATGGACATTAGTTTATTTTGGTACCTCTAAACCATGCGTAAAGCCTAAAGCATGACGTAGCCTCAGTGGCCATTTGAGAAGTTTGGTATTATTAGTTTTGTCAGTGTTTAAGGACAAATAGCCGCTACAAGCGGTGTGCGACCAACAGCGGTGTCGCGCCGAAAGGCAGCTTTGGGGAGGAAGAAGAGCTCTGGGAGCTGGCAGACCTCCAAAGATCTCCAGGAAAGACCACCCTTACACAAAGGGAGGAAGAGCAAAAGCTGTGCCCCATAGCCTGTCCAATTGTGTGCAGGAGAACACCTCCCTGGGGAAAACCCACTAGGTGCACACACACCTACCCTACCTAAATGTCCATAACAGTTCTCTTAATCAGTTATTGATCAGTTCTCTCTCAATCAGTTTGGTTTGTTTAAGTTCATGGTTCTGTTGCTAGTTTTTACAAATCTAGACAAAACCTGAACTAATACAAATACTTGTAAgctatcttattttttttttttattgagtatTTGTATTTACATTGGATGTGAGTTCAGATAAGTGTAGTATATTAGTGTCGACGTAGTTGTTTATAAAAGGCTTTCCACTCTTACTGCACAACGACTGACTACTAAGAATCTAACTGTGGCCAATCAACACTAATGGCAGGCATATGTGTCAAAGATGACATTTTGACTCCTgttttgtttaatgtatgcatgtattCAACATAACTCTACCTAATAGGTACAATACAGGCTatgtataggcctactgtatgaaTTGTGTTATCAATATGGTCATTCTGAGTGGTTATTAGGCTACTGATCTAAGTCAAAATGTTCTGATGATGAAATGAGTGATGACCTATAAGCCTGCCTTTGATGTCTTTCCTAACCCTAGGAATaaatattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU78864 lncRNA upstream 16602 2716728 ~ 2716938 (+) True G58679
TU78858 lncRNA upstream 27401 2705813 ~ 2706139 (+) True G58673
TU78837 lncRNA upstream 64863 2668086 ~ 2668677 (+) True G58653
TU78834 lncRNA upstream 65705 2667258 ~ 2667835 (+) True G58652
TU78833 lncRNA upstream 66499 2665818 ~ 2667041 (+) True G58651
TU78898 lncRNA downstream 62762 2798585 ~ 2798813 (+) True G58710
XR_005639589.1 lncRNA downstream 67718 2803541 ~ 2804656 (+) True LOC120561363
TU78911 lncRNA downstream 75043 2810866 ~ 2811277 (+) True G58723
TU78914 lncRNA downstream 78101 2813924 ~ 2814531 (+) True G58726
XR_005639590.1 lncRNA downstream 86056 2821879 ~ 2829531 (+) True LOC120561364
XM_039803601.1 mRNA upstream 71090 2656511 ~ 2662450 (+) True mlec
XM_039803596.1 mRNA upstream 78943 2647129 ~ 2654597 (+) False cabp1a
XM_039804452.1 mRNA downstream 142551 2878374 ~ 2883861 (+) True lman2lb
XM_039804446.1 mRNA downstream 148938 2884761 ~ 2889848 (+) True LOC120561358
XM_039804447.1 mRNA downstream 149524 2885347 ~ 2889848 (+) False LOC120561358
XM_039804435.1 mRNA downstream 161717 2897540 ~ 2913826 (+) True LOC120561351
XM_039804432.1 mRNA downstream 202206 2938029 ~ 2993038 (+) False nsmfb
TU78000 other upstream 2521170 210742 ~ 212370 (+) True LOC120560799
TU78941 other downstream 142578 2878401 ~ 2879744 (+) False lman2lb
TU79382 other downstream 1381456 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 1688318 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 1696348 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 1696845 4432668 ~ 4432739 (+) True trnaq-uug_2

Expression Profile