RNA id: XR_005639569.1


Basic Information

Item Value
RNA id XR_005639569.1
length 264
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id LOC120561177
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 3837307 ~ 3837679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gggagagagagagggggatgacatgcagcaaagggcctcgagtcggatttgaacccaggcCACTGGCAAGGACCGAGCCCACAtggggcgcgcgctctaccagATCCATTTGAACCAGCAGAGGGGGTTAACAATGAAGACAACTCCTCCCATGATCCCACACAACTTCACAacatcatcaaaagtccagGTTTACACCCGTGGTTTCGATTGACAGACCCCTAGaggcagaaaataaaatacaaaatattttaaaatgaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU79263 lncRNA upstream 34210 3799038 ~ 3803097 (+) True G58986
TU79211 lncRNA upstream 230998 3606062 ~ 3606309 (+) True G58948
TU79205 lncRNA upstream 281128 3547808 ~ 3556179 (+) True G58944
TU79200 lncRNA upstream 313686 3522846 ~ 3523621 (+) True G58941
TU79146 lncRNA upstream 314551 3521131 ~ 3522756 (+) False LOC120560521
TU79324 lncRNA downstream 53366 3891045 ~ 3891853 (+) True G59033
TU79323 lncRNA downstream 57991 3895670 ~ 3896241 (+) True G59032
TU79333 lncRNA downstream 123381 3961060 ~ 3961319 (+) True G59042
TU79389 lncRNA downstream 295169 4132848 ~ 4133064 (+) True G59093
TU79435 lncRNA downstream 470240 4307919 ~ 4329460 (+) True G59132
XM_039804162.1 mRNA upstream 9880 3818322 ~ 3827427 (+) True LOC120561175
XM_039803625.1 mRNA upstream 61634 3688045 ~ 3775673 (+) False arid3c
XM_039803627.1 mRNA upstream 63789 3688045 ~ 3773518 (+) True arid3c
XM_039804121.1 mRNA upstream 162082 3630736 ~ 3675225 (+) True mamdc2a
XM_039803133.1 mRNA upstream 289974 3525307 ~ 3547333 (+) True fam189a2
XM_039804168.1 mRNA downstream 10800 3848479 ~ 3868576 (+) False rad17
XM_039804172.1 mRNA downstream 10800 3848479 ~ 3868576 (+) False rad17
XM_039804174.1 mRNA downstream 10890 3848569 ~ 3865866 (+) False rad17
XM_039804167.1 mRNA downstream 10893 3848572 ~ 3868576 (+) True rad17
XM_039804169.1 mRNA downstream 10893 3848572 ~ 3868576 (+) False rad17
TU78941 other upstream 957563 2878401 ~ 2879744 (+) False lman2lb
TU78000 other upstream 3624937 210742 ~ 212370 (+) True LOC120560799
TU79382 other downstream 279600 4117279 ~ 4117631 (+) True G59086
TU79482 other downstream 586462 4424141 ~ 4429981 (+) True G59172
unassigned_transcript_241 other downstream 594492 4432171 ~ 4432253 (+) True trnal-aag_1
unassigned_transcript_242 other downstream 594989 4432668 ~ 4432739 (+) True trnaq-uug_2
TU79509 other downstream 692431 4530110 ~ 4531165 (+) False mrpl41

Expression Profile