RNA id: XR_005639583.1


Basic Information

Item Value
RNA id XR_005639583.1
length 262
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120561318
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 13904693 ~ 13905340 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGCCGACAGACCATAGTGATGTCCTGCCCGCCAGTGAACGACCTCATGGACCTCTGGCCTGCTCTTAAAATAGAGTCTGAGTTGTATGCAGAGTTCCAGCGGATTACAAATCAGAACCTGCCCAACACGTGCTATGCTGAGCTTGCCGCTATCTTCCTCGACTGATGACCTTATTCAgacggaaggcatcaaaaactgggaagacagcagatgctctggctgaaattttaaaaatccatgatgaacaggaaatccatgaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639581.1 lncRNA upstream 35 13903363 ~ 13904658 (+) True LOC120561317
XR_005639582.1 lncRNA upstream 35 13903363 ~ 13904658 (+) False LOC120561317
XR_005639584.1 lncRNA upstream 79459 13812459 ~ 13825234 (+) False LOC120561319
TU82107 lncRNA upstream 89661 13812112 ~ 13815032 (+) True LOC120561319
TU82084 lncRNA upstream 217781 13686631 ~ 13686912 (+) True G61259
TU82166 lncRNA downstream 155582 14060922 ~ 14061171 (+) True G61332
TU82211 lncRNA downstream 346916 14252256 ~ 14253343 (+) False LOC120560400
TU82212 lncRNA downstream 356815 14262155 ~ 14262869 (+) True G61376
TU82213 lncRNA downstream 374792 14280132 ~ 14281656 (+) False LOC120560400
TU82225 lncRNA downstream 420050 14325390 ~ 14327533 (+) True G61389
XM_039804375.1 mRNA upstream 2044 13869682 ~ 13902649 (+) True LOC120561313
XM_039804373.1 mRNA upstream 258343 13567559 ~ 13646350 (+) True adgrd2
XM_039804374.1 mRNA upstream 259189 13567559 ~ 13645504 (+) False adgrd2
XM_039804576.1 mRNA upstream 538483 13349141 ~ 13366210 (+) False lhx2b
XM_039802081.1 mRNA downstream 39698 13945038 ~ 13961157 (+) True LOC120559997
XM_039802082.1 mRNA downstream 39698 13945038 ~ 13961156 (+) False LOC120559997
XM_039804110.1 mRNA downstream 80891 13986231 ~ 14000271 (+) True atad1a
XM_039804269.1 mRNA downstream 242230 14147570 ~ 14188917 (+) True piwil2
XM_039802181.1 mRNA downstream 293415 14198755 ~ 14211704 (+) False LOC120560074
TU81938 other upstream 980857 12921147 ~ 12923836 (+) False G61139
TU81939 other upstream 980857 12921147 ~ 12923836 (+) True G61139
TU81647 other upstream 1978092 11926183 ~ 11926601 (+) True G60897
XR_005639563.1 other upstream 3152253 10748116 ~ 10752440 (+) False LOC120561144
TU82171 other downstream 202143 14107483 ~ 14109546 (+) True G61337
TU82172 other downstream 236102 14141442 ~ 14142050 (+) True G61338
TU82219 other downstream 378077 14283417 ~ 14283871 (+) True G61383
TU82226 other downstream 412199 14317539 ~ 14319506 (+) True G61390
TU82227 other downstream 412199 14317539 ~ 14319506 (+) False G61390