RNA id: XR_005639608.1


Basic Information

Item Value
RNA id XR_005639608.1
length 119
RNA type rRNA
GC content 0.61
exon number 1
gene id LOC120561496
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 7697927 ~ 7698045 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcttacggccataccaccctgaacacgcccgatctcgtccgatctcggaagctaagcagggtcgggccgggtcagtacttggatgggagaccgcctgggaatacccggtgctgtaagct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU80365 lncRNA upstream 50778 7646705 ~ 7647149 (+) True G59839
TU80363 lncRNA upstream 61873 7635595 ~ 7636054 (+) True G59837
TU80343 lncRNA upstream 66686 7630506 ~ 7631241 (+) True G59826
TU80351 lncRNA upstream 109297 7587795 ~ 7588630 (+) True G59833
TU80345 lncRNA upstream 121800 7574730 ~ 7576127 (+) False LOC120560567
TU80492 lncRNA downstream 176769 7874814 ~ 7878371 (+) False atp2a2a
TU80491 lncRNA downstream 179123 7877168 ~ 7878371 (+) False atp2a2a
TU80483 lncRNA downstream 222732 7920777 ~ 7924556 (+) True G59931
TU80665 lncRNA downstream 528847 8226892 ~ 8227173 (+) True G60082
TU80669 lncRNA downstream 533959 8232004 ~ 8236195 (+) False G60084
XM_039804516.1 mRNA upstream 34798 7658172 ~ 7663129 (+) True gucd1
XM_039803853.1 mRNA upstream 40275 7649773 ~ 7657652 (+) True LOC120560946
XM_039803854.1 mRNA upstream 40275 7649773 ~ 7657652 (+) False LOC120560946
XM_039802908.1 mRNA upstream 58518 7632692 ~ 7639409 (+) False LOC120560421
XM_039803852.1 mRNA downstream 123260 7821305 ~ 7845805 (+) True ift81
XM_039803270.1 mRNA downstream 149626 7847671 ~ 7877124 (+) True atp2a2a
XM_039803271.1 mRNA downstream 149640 7847685 ~ 7877124 (+) False atp2a2a
XM_039803275.1 mRNA downstream 190633 7888678 ~ 7900524 (+) True LOC120560607
XM_039803274.1 mRNA downstream 200518 7898563 ~ 7904594 (+) True LOC120560606
XR_005639610.1 other upstream 4718 7693091 ~ 7693209 (+) True LOC120561498
XR_005639604.1 other upstream 7135 7690674 ~ 7690792 (+) True LOC120561492
XR_005639603.1 other upstream 13164 7684645 ~ 7684763 (+) True LOC120561481
TU80342 other upstream 68853 7625807 ~ 7629074 (+) False zbtb26
XR_005639484.1 other upstream 74228 7600093 ~ 7623699 (+) False susd1
XR_005639609.1 other downstream 1088 7699133 ~ 7699251 (+) True LOC120561497
TU80548 other downstream 330147 8028192 ~ 8035361 (+) False cux2b
XR_005639399.1 other downstream 733492 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other downstream 733492 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_244 other downstream 746409 8444454 ~ 8444525 (+) True trnaw-cca_2