RNA id: unassigned_transcript_246


Basic Information

Item Value
RNA id unassigned_transcript_246
length 72
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaw-cca_4
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8446780 ~ 8446851 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTCTGTGGTGCAACGGTAGCGAGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCAGGGTca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639401.1 lncRNA upstream 9182 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA upstream 9188 8436947 ~ 8437592 (+) False LOC120560008
XR_005639402.1 lncRNA upstream 15550 8428953 ~ 8431230 (+) True LOC120560009
TU80748 lncRNA upstream 23037 8423189 ~ 8423743 (+) False LOC120560006
TU80747 lncRNA upstream 28930 8417642 ~ 8417850 (+) True G60147
TU80778 lncRNA downstream 31728 8478579 ~ 8478887 (+) True G60174
TU80781 lncRNA downstream 36044 8482895 ~ 8483122 (+) True G60177
TU80786 lncRNA downstream 144402 8591253 ~ 8591473 (+) True G60182
XR_005639469.1 lncRNA downstream 150691 8597542 ~ 8598388 (+) True LOC120560290
TU80794 lncRNA downstream 200370 8647221 ~ 8647449 (+) True G60189
XM_039802098.1 mRNA upstream 12108 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 19035 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 19035 8423712 ~ 8427745 (+) False LOC120560006
XM_039803746.1 mRNA upstream 44211 8397481 ~ 8402569 (+) False LOC120560868
XM_039803055.1 mRNA downstream 18320 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 363703 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 415119 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 415119 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 475432 8922283 ~ 8933253 (+) True zgc:113436
unassigned_transcript_245 other upstream 1091 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_244 other upstream 2255 8444454 ~ 8444525 (+) True trnaw-cca_2
XR_005639399.1 other upstream 12108 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other upstream 12114 8431537 ~ 8434666 (+) True LOC120560007
TU80548 other upstream 411419 8028192 ~ 8035361 (+) False cux2b
unassigned_transcript_247 other downstream 1094 8447945 ~ 8448016 (+) True trnaw-cca_5
unassigned_transcript_248 other downstream 2293 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_249 other downstream 4622 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_250 other downstream 6948 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_251 other downstream 766391 9213242 ~ 9213313 (+) True trnaq-cug_4