RNA id: unassigned_transcript_247


Basic Information

Item Value
RNA id unassigned_transcript_247
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnaw-cca_5
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8447945 ~ 8448016 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTCTGTGGTGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCAGGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639401.1 lncRNA upstream 10347 8434741 ~ 8437598 (+) True LOC120560008
TU80762 lncRNA upstream 10353 8436947 ~ 8437592 (+) False LOC120560008
XR_005639402.1 lncRNA upstream 16715 8428953 ~ 8431230 (+) True LOC120560009
TU80748 lncRNA upstream 24202 8423189 ~ 8423743 (+) False LOC120560006
TU80747 lncRNA upstream 30095 8417642 ~ 8417850 (+) True G60147
TU80778 lncRNA downstream 30563 8478579 ~ 8478887 (+) True G60174
TU80781 lncRNA downstream 34879 8482895 ~ 8483122 (+) True G60177
TU80786 lncRNA downstream 143237 8591253 ~ 8591473 (+) True G60182
XR_005639469.1 lncRNA downstream 149526 8597542 ~ 8598388 (+) True LOC120560290
TU80794 lncRNA downstream 199205 8647221 ~ 8647449 (+) True G60189
XM_039802098.1 mRNA upstream 13273 8432952 ~ 8434672 (+) False LOC120560007
XM_039802097.1 mRNA upstream 20200 8423712 ~ 8427745 (+) True LOC120560006
XM_039802096.1 mRNA upstream 20200 8423712 ~ 8427745 (+) False LOC120560006
XM_039803746.1 mRNA upstream 45376 8397481 ~ 8402569 (+) False LOC120560868
XM_039803055.1 mRNA downstream 17155 8465171 ~ 8482178 (+) True LOC120560486
XM_039803061.1 mRNA downstream 362538 8810554 ~ 8836973 (+) True zgc:110329
XM_039802727.1 mRNA downstream 413954 8861970 ~ 8907724 (+) True slc4a5a
XM_039802728.1 mRNA downstream 413954 8861970 ~ 8907724 (+) False slc4a5a
XM_039802730.1 mRNA downstream 474267 8922283 ~ 8933253 (+) True zgc:113436
unassigned_transcript_246 other upstream 1094 8446780 ~ 8446851 (+) True trnaw-cca_4
unassigned_transcript_245 other upstream 2256 8445618 ~ 8445689 (+) True trnaw-cca_3
unassigned_transcript_244 other upstream 3420 8444454 ~ 8444525 (+) True trnaw-cca_2
XR_005639399.1 other upstream 13273 8431537 ~ 8434672 (+) False LOC120560007
XR_005639400.1 other upstream 13279 8431537 ~ 8434666 (+) True LOC120560007
unassigned_transcript_248 other downstream 1128 8449144 ~ 8449215 (+) True trnaw-cca_6
unassigned_transcript_249 other downstream 3457 8451473 ~ 8451544 (+) True trnaw-cca_7
unassigned_transcript_250 other downstream 5783 8453799 ~ 8453870 (+) True trnaw-cca_8
unassigned_transcript_251 other downstream 765226 9213242 ~ 9213313 (+) True trnaq-cug_4
TU81099 other downstream 1478934 9926950 ~ 9953239 (+) False LOC120560959