RNA id: unassigned_transcript_259


Basic Information

Item Value
RNA id unassigned_transcript_259
length 72
RNA type tRNA
GC content 0.54
exon number 1
gene id trnac-gca_19
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15617885 ~ 15617956 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGGTatagctcagtggtagagcatttGACTGCAGATCAAGAGGTCTCCGGTTCAATTCCGGATGCCCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU82871 lncRNA upstream 44912 15532867 ~ 15572973 (+) True G61867
XR_005639524.1 lncRNA upstream 72408 15540869 ~ 15545477 (+) True LOC120560848
XR_005639523.1 lncRNA upstream 78041 15539355 ~ 15539844 (+) True LOC120560847
TU82867 lncRNA upstream 85089 15532108 ~ 15532796 (+) False LOC120560526
TU82761 lncRNA upstream 241883 15374777 ~ 15376002 (+) True G61782
TU82947 lncRNA downstream 139634 15757590 ~ 15777141 (+) False mctp1a
TU82990 lncRNA downstream 325784 15943740 ~ 15961114 (+) False fam172a
TU82991 lncRNA downstream 343645 15961601 ~ 16045838 (+) True G61966
TU82993 lncRNA downstream 417495 16035451 ~ 16056705 (+) True G61968
TU82995 lncRNA downstream 430427 16048383 ~ 16049879 (+) False G61970
XM_039804631.1 mRNA upstream 5303 15604966 ~ 15612582 (+) True LOC120561471
XM_039803730.1 mRNA upstream 54891 15558504 ~ 15562994 (+) True LOC120560850
XM_039803141.1 mRNA upstream 85257 15518780 ~ 15532628 (+) True LOC120560526
XM_039803140.1 mRNA upstream 97480 15508922 ~ 15520405 (+) True LOC120560525
XM_039803725.1 mRNA upstream 150477 15435741 ~ 15467408 (+) True LOC120560844
XM_039802831.1 mRNA downstream 18842 15636798 ~ 15775516 (+) False mctp1a
XM_039802834.1 mRNA downstream 18842 15636798 ~ 15775516 (+) False mctp1a
XM_039802832.1 mRNA downstream 18842 15636798 ~ 15775516 (+) False mctp1a
XM_039802833.1 mRNA downstream 18843 15636799 ~ 15775516 (+) False mctp1a
XM_039802835.1 mRNA downstream 18843 15636799 ~ 15775516 (+) False mctp1a
XR_005639522.1 other upstream 183442 15431708 ~ 15434443 (+) False zgc:101664
XR_005639607.1 other upstream 319242 15298542 ~ 15298643 (+) True LOC120561495
TU82454 other upstream 534437 15078874 ~ 15083448 (+) True G61535
TU82426 other upstream 667264 14939393 ~ 14950621 (+) False cntrl
TU82399 other upstream 823283 14786011 ~ 14794602 (+) False G61514
unassigned_transcript_260 other downstream 788 15618744 ~ 15618815 (+) True trnac-gca_20
unassigned_transcript_261 other downstream 1117 15619073 ~ 15619144 (+) True trnac-gca_21
TU82943 other downstream 145158 15763114 ~ 15777141 (+) True mctp1a
XR_005639530.1 other downstream 850367 16468323 ~ 16475897 (+) False LOC120560890
TU83070 other downstream 850411 16468367 ~ 16475905 (+) False LOC120560890