RNA id: unassigned_transcript_266


Basic Information

Item Value
RNA id unassigned_transcript_266
length 72
RNA type tRNA
GC content 0.61
exon number 1
gene id trnap-ugg
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 32571688 ~ 32571759 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggctcgttggtctaggggtatgattctcgcttTGGGTGCGAGAGgtcccgggttcaaatcccggACGAGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88700 lncRNA upstream 56183 32511619 ~ 32515505 (+) True G66293
TU88703 lncRNA upstream 84501 32478492 ~ 32487187 (+) False LOC120560610
TU88702 lncRNA upstream 96608 32474487 ~ 32475080 (+) True G66295
TU88701 lncRNA upstream 97640 32471185 ~ 32474048 (+) True G66294
TU88699 lncRNA upstream 100863 32470359 ~ 32470825 (+) False mapk1
TU88734 lncRNA downstream 38150 32609909 ~ 32612938 (+) False slc39a14
TU88731 lncRNA downstream 41240 32612999 ~ 32613908 (+) True G66319
TU88743 lncRNA downstream 113510 32685269 ~ 32693217 (+) False LOC120560708
XR_005639506.1 lncRNA downstream 113581 32685340 ~ 32694087 (+) True LOC120560708
TU88756 lncRNA downstream 148996 32720755 ~ 32738375 (+) True G66340
XM_039803277.1 mRNA upstream 60951 32477038 ~ 32510737 (+) True LOC120560610
XM_039803280.1 mRNA upstream 60951 32478338 ~ 32510737 (+) False LOC120560610
XM_039803278.1 mRNA upstream 60951 32480652 ~ 32510737 (+) False LOC120560610
XM_039803279.1 mRNA upstream 60951 32485724 ~ 32510737 (+) False LOC120560610
XM_039803502.1 mRNA upstream 100861 32440375 ~ 32470827 (+) True mapk1
XM_039802543.1 mRNA downstream 441 32572200 ~ 32610825 (+) True slc39a14
XM_039802541.1 mRNA downstream 444 32572203 ~ 32610825 (+) False slc39a14
XM_039802542.1 mRNA downstream 9451 32581210 ~ 32610825 (+) False slc39a14
XM_039802540.1 mRNA downstream 43133 32614892 ~ 32626689 (+) True ascc2
XM_039803505.1 mRNA downstream 65077 32636836 ~ 32659330 (+) True LOC120560720
TU88651 other upstream 201704 32364860 ~ 32369984 (+) True G66263
TU88642 other upstream 241698 32322507 ~ 32329990 (+) True G66256
TU88617 other upstream 434722 32126293 ~ 32136966 (+) True G66231
XR_005639593.1 other upstream 761409 31809632 ~ 31810279 (+) False dmrt3a
TU88223 other upstream 1685523 30857580 ~ 30886165 (+) False LOC120561064
XR_005639474.1 other downstream 505487 33077246 ~ 33112816 (+) False cds1
TU89079 other downstream 1204166 33775925 ~ 33776398 (+) True G66578
XR_005639528.1 other downstream 1942251 34514010 ~ 34527405 (+) False cfap157
TU89395 other downstream 2194187 34765946 ~ 34773700 (+) False LOC120561070
TU89401 other downstream 2289740 34861499 ~ 34864266 (+) False G66832