RNA id: TCONS_00003010


Basic Information

Item Value
RNA id TCONS_00003010
length 592
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_000031
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1358731 ~ 1360831 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAAATCAACATTTACAATCTATTTACACACAAAAAGTGTCACGTTTGGGTTCTCGAATCGTCCATCCTGATGTCAGATCGCTGTAAAGTGAGTTCAGAGTCTGCAGAAGCTCTTAAAGAAACTCTTCTGTTGAAAATGAGATGTAGATTTACTGATCAATTCAAGCAGTTCGCTGACTGCCACCATCATGTCActtgtgtttttgtcattttaacatGCTGTTTTGCATCGGTGTGAGTTTTAGACTCGAAACAAACTCTACAGAAGATCAGAAAGGCACACGCTTAACGATATGCAAGCTACAAAGTAAAAGAAAGCCAAGTGATTATATAAATGTCATcagtttaaacattattatttttgtatagtTTGCATAGTGGTTATAactgtggcttcacagcaagaagCAGAACTTACTATTTACTATATTCAATTAAAGCTATTTTGCATTTATATACCAAACTGGAGATCAactgatattatttttattaatggtcTGAAATATGAAATTAATTTAGTCAAtaagcagcaataaataataattaggaaaaacattcattcattttcttgtcggcttagtccctttattaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0048856 anatomical structure development biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003009 lncRNA upstream 16494 1315289 ~ 1342237 (+) True XLOC_000030
TCONS_00003008 lncRNA upstream 36778 1315289 ~ 1321953 (+) False XLOC_000030
TCONS_00003007 lncRNA upstream 325093 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA upstream 335397 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00003006 lncRNA upstream 447180 794976 ~ 911551 (+) True XLOC_000026
TCONS_00002806 lncRNA downstream 211396 1571847 ~ 1576390 (+) False XLOC_000032
TCONS_00002807 lncRNA downstream 211396 1571847 ~ 1578251 (+) False XLOC_000032
TCONS_00003014 lncRNA downstream 256752 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00003013 lncRNA downstream 256752 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00003012 lncRNA downstream 256752 1617203 ~ 1619314 (+) True XLOC_000034
TCONS_00000059 mRNA upstream 387780 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000058 mRNA upstream 750484 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000057 mRNA upstream 750676 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000056 mRNA upstream 755334 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000054 mRNA upstream 767400 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000062 mRNA downstream 239528 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000063 mRNA downstream 329324 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000066 mRNA downstream 351689 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000072 mRNA downstream 428906 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000074 mRNA downstream 444843 1805294 ~ 1815660 (+) True XLOC_000037
TCONS_00000060 other upstream 139926 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000053 other upstream 782210 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 812514 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 843409 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 1064837 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000061 other downstream 215032 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 351702 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 357246 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 358160 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other downstream 358756 1719207 ~ 1732326 (+) False XLOC_000036

Expression Profile

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