RNA id: TCONS_00076065


Basic Information

Item Value
RNA id TCONS_00076065
length 4224
RNA type mRNA
GC content 0.60
exon number 17
gene id XLOC_038620
representative False

Chromosome Information

Item Value
chromosome id NW_003336534.1
NCBI id KN150487.1
chromosome length 123701
location 423 ~ 9079 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atatctggagctgtcggcgattaaaatcatgccgtgtgaaatgagttttgactgaaaataacatcagccatcgcctacagcccaatgagagagcagctttcacttgtgtgtgtgtgtgttatatgtgtgtgtgtgtgcagatgacGAGGCGTTCCTCCGTAAGCAGAAGCACCTGAAGGCCCAGGCGTTTGCTCTGAAGATGCGTCCGCGTAAAGAAGTGCTGGAGGTCAACTACGTGAGTCTGAGCTgcgtgatgagtgtgtgtgtagctgatctgatcacacacacacacacacacacacactcacacacacagcagtatAGATGAGCACTATTGATTATCCTGATGGTCCAGCGGCTGCACTTCTCTTctgagagtctgtgtgtgtgtataatgtgtgtgtgttgtgcagatCGACCTGTACATGTGTATGGCGTGTGGGCGGGGCGATGAGGAGGACCGCCTCCTGCTGTGTGACGGCTGTGATGACAGCTGCCACACCTTCTGCCTGATCCCGCCGCTGCAGGACGTCCCCCGCGGAGACTGGCGCTGCCCCAAGTGTGTGGCTGAGGAGTGCAGTAAGCCCCGTGAGGCGTTCGGGTTCGAGCAGGCGGTGCGCGAGTACACACTCCAGAGCTTCGGGGAGATGGCGGACCACTTCAAGTCTGACTACTTCAACATGCCTGTCCatatgGTGCCGACGGAGCTGGTGGAGAAGGAGTTCTGGCGTCTGGTCAGCAGTATTGACGAGGATGTGATCGTGGAGTACGGCGCTGACATCAGCTCTAAAGATGTGGGCAGCGGGTTCCCTGTGCGGGACGGCAGGAGGAAGCTGATCGGGGATGAGGAGgagtaCGCAGCGTCGGGCTGGAACCTGAACAACCTGCCAGTGCTGGAGCAGTGTGTGCTGACACACACCAGCGGGGACATCAGCGGGATGAAGGTGccctggctgtatgtgggcatgTGCTTCTCCTCCTTCTGCTGGCACATCGAGGACCACTGGAGCTCCTCCATCAACTACCTGCACTGGGGTGAACCCAAGACCTGGTACGGCGTCCCGGCCCGCGCCGCTGAGCAGCTGGAGTGTGTGATGAAGAAGGTGGCCCCGGAGCTGTTTGACTCCCAGCCAGACCTCCTGCACCAGCTGGTCACACTCATGAACCCCAACGTGCTGATGGAGCATGGCGTCCCGGTGTACCGGACCAATCAGTGCGCAGGAGAGTTCGTCATCACCTTCCCCAGAGCCTATCACAGCGGCTTCAACCAGGGCTACAACTTCGCTGAGGCCGTCAACTTCTGCACCGCCGACTGgCTTCCCATCGGCAGGCAGTGTGTGTCGCACTACCGGCGTCTGCAGCGCTACTGTGTGTTCTCGCATGAGGAGCTGGTGTGTAAGATGGCGGCGGACCCCGAGGGTCTGGATGTGGAGCTGGCGGCGGCCGCGGTGCGGGAGCTGGAGGAGCTGCTGGAGGAGGAGACGCGGCTGAGGAGCGCCCTGGAGGAGACGGGGGTGATCTCCTCAGTGCAGGAGGTGTTCGAGCTGCTGCCGGATGACGAGCGTCAGTGCTGGAGCTGTAAGACCACCTGTTTCCTGTCGGCAGTGACCTGCAGCTGCAGCCCGGAGCGGCTGGTGTGTCTGCGTCACGTGGGGGAGCTGTGCAGCTGCCCGCCCGCCAACAAGTGCCTGCGcttcAGGTACGCTCAGGAGGAGTTCCCCGCCATGCTGTATGGGGTGAAGACTCGTGCTCAGTCCTATGACACCTGGTCCCGCAGGGTGACGGAGGCGCTAGCGGCAGACAGCAGGAACAAGAGAGATGTGATCGAGCTGAAAGTGCTGCTGGAGGACGCGGAGGACCGCAGGTACCCAGAGAACAGCCTCCTGCGCAGCCTCAGGGACACACTGAAGGAGGCAGAGACCTGCTCCTCTGTAGCACAGctgctgctcacacacacacaccgacacagaaggGAGCGTGCGGATAGCGGCACACAGAAGCCGCGCAGTAAGCTGACGGTGGAGGAGCTGAAGGTGTTCGTGGAGCAGCTCTATAGACTGCCCTGCGTCATCAGCCAGGCCCGACAGGTCAAGGATCTGCTGGAGAGTGTGCTGTTGTTCCACGAGCGTGCGCAGGCAGCGCTGGCGGACCTGACGCCAGACTCCGGGAAGCTGCAGGCGCTGCTGGACCTGGGGTCAGGGCTGGACGTGGAGCTGCCGGAGCTGCCTCGGCTGCAGCAGGAGCTGACCCAGGCTCGCTGGCTGGACGAGGTGCGTGTAACACTTGCGGAACCGCAGAGGGTCACGCTGGAGCTGATGAAGCGCCTCATCGACTCGGGCGTAGGTCTGGCCCCGCACCCGGCCGTGGAGAAGGCCATGGCGGAGCTGCAGGAGCTGCTGACGGTGTCCGAGCACTGGGAGGAGCGTGCCAGAGCCTGTCTGCAGGCCCGGCCAAGACACAACCTGCTGACGCTGGAGAGCATCGTCACCGAGGCCAAGAACATCCCGGCACACCTGCCCAATGTGCTGACACTCAGAGACGCCCTGCACCGCGCCAAAGAGTGGAGCGCCAGGGTGGAGGCCATACAGAACGGCACTAACTACGCCTACCTGGAGCAGCTGGAGGGTCTGCTGGCGAGGGGCCGCTCTATCCCAGTACGGCTGGAGGCTCTGCCCCAGGTGGAGTCTCAGGTGGGCTCAGCAAGAGCCTGGAGAGAGAGGACCGCCCGCACCTTCCTGAAGAAGAACTCCACATACACACTGctgcagGTGCTGAGCCCCCGTGTGGACGTGGGTGTGTACGGCAGCAGTAAGAGCAAGCGTCGGCGTGTGAAGGAGCTGCTGGAGAAGGAGCGAGGGCTGGATCTGGAGGCGGTGTGCGAGCTGCAGGAGTGTGTGGAGGATGCGCGGGACCCCGCCGCAGTGGTGGCCGCCTTCAAGGCCCGCGAGCAGCAGGAGGTGCAGGCCGTGCACTCGTTACGGTCCGCCAACCTGGCCAAGATGGCGCTGGTGGAGCGTGTGGAGGAGGTGAAGTTCTGCCTGTGCCGCCGCTCTGCCTCCGGCTTCATGCTGCAGTGTGAGCTCTGCAAGGACTGGTTTCACGGCGCCTGCGTGCCCCTGCCCAAAGCCGGATCCCAGAAGAAGCTTGCGTCCGGCTGGCAGAGCGGCAGCAAGGAGAGCAAGTTCCTGTGCCCGCTGTGCCAGCGCTCACGCCGCCCGCGCCTGGAGACCATCCTGTCCctgctggtgtccctgcagaagCTGCCGGTGCGGCTGCCGGAGGGCGAGGCGCTGCAGTGCCTGACGGAGCGGGCCATGGGCTGGCAGGACCGCGCCCGACAGGCCCTGGCCACAGACGAGCTGTCCTCCGCCCTCGCCAAGCTGTCGGTGCTCAGCCAGCGCATGGTGGAGCTAGCGGCCCGCGAGAAGACCGAGAAGATCATCAACGCTGAGCTGCAGAAGGCCGCCGCTAACCCTGACCTGCAGGGCCACATCCAGACGTTCCAGCAGTCGGGCTTCAGCAGAGCAGCGTCTCCTCGGCCCTCGCTGGACTATGATGATGAGGAGACGGACTCAGACGAGGACATTCGAGAGACGTACGGTTATGACAGcaagGACGCAGGCGAGGTGAAGCCGTACCTATTCTGTGATGAGGAGATCCCAGTGAAGTCTGAGGAGGTGGTCAGTCACATGTGGCCCACCACACCCTCCTTCTGTGCGGAGCACGCCTACTCCTCCGCCTCCAAGAGCTGCCCGCAGAGTGAGTGCACACCTGAACACCTGAGTATATAGAGGTACACCTGAGTATATAGAGTCACCTGTACACCCGAGTATATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCCGTACACCTGAGTATGTATAGTCACCTGTACACCCGGTCACCCGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCTGTACATCTGAGTATATAGAGTCACCTGTACACCTGAGTATATAGAGTCACCCGTACACCTGAGTATATAGAGTCACCTGTACACCTGAGTATGTAGAGTCACCCGTACACCTGAGTATATATAGTCACCTGTACACCCGAGTATATAGAGTCA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-150114-1 Predicted to enable dioxygenase activity and metal ion binding activity. Predicted to act upstream of or within chromatin organization. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in ankylosing spondylitis. Orthologous to human KDM5A (lysine demethylase 5A).

Ensembl:

ensembl_id ENSDART00000176711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00076066 mRNA downstream 6376 15455 ~ 17143 (+) True XLOC_038621
TCONS_00076067 mRNA downstream 14359 23438 ~ 31563 (+) True XLOC_038622
TCONS_00076068 mRNA downstream 22623 31702 ~ 57294 (+) False XLOC_038623
TCONS_00076071 mRNA downstream 22623 31702 ~ 60475 (+) False XLOC_038623
TCONS_00076070 mRNA downstream 22623 31702 ~ 60475 (+) False XLOC_038623

Expression Profile

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