RNA id: TCONS_00076228


Basic Information

Item Value
RNA id TCONS_00076228
length 477
RNA type mRNA
GC content 0.49
exon number 5
gene id XLOC_038748
representative True

Chromosome Information

Item Value
chromosome id NW_018394383.1
NCBI id KZ115991.1
chromosome length 3745
location 1443 ~ 2298 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTCCTCCTGGCATCCCTCATCTTTCAGCAGGACCAGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCAAGGCATCAGGAGACAGTCTGCGAAAGCGGCCTGCTCGTGAGATCGACCCAGAAGATGAGTCCAAAAGCACATCAGCTCCCCCTAAAATGATCAAGTCAGGGTTTAGCATGACAGCAAAGAAACCTATGGCCATCTCTATCAAGCTGGGagcaaatAAACCTAAAGAGCCTCCCCCTGCCATACCTCCCAAGAAATCTGGACTTGCATCTGTTTTTAATGAGGACGATGATAGCGAGCCTGAAGAAATGCCACCTGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGCCCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAAAAACTGTGGGAGAGGAAGCTTAAATCCCACACAGATCAGTAG

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-130 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and protein ubiquitination. Predicted to be active in nucleus. Orthologous to human PCNP (PEST proteolytic signal containing nuclear protein).

Ensembl:

ensembl_id ENSDART00000187524

JBrowse2

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU37840 False 1635 TUCP 0.42 5 NC_053114.1 19123566 ~ 19126376 (-)
bowfin (Amia calva) TU37840 True 234 lncRNA 0.38 1 CM030123.1 52288890 ~ 52289123 (-)
bowfin (Amia calva) AMCG00014407 False 501 mRNA 0.50 5 CM030128.1 13246350 ~ 13250280 (+)