RNA id: TCONS_00003082


Basic Information

Item Value
RNA id TCONS_00003082
length 3409
lncRNA type intronic
GC content 0.33
exon number 1
gene id XLOC_000369
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31141119 ~ 31144527 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAAGCACAATATCATCCCCACACTGTcaggtgtttgtgttgtgttccaTGTGCTTCCTGTTTTTGTCATGTGATTCCTTTATTCCATTTTCCCACCATGTGTTAATGTTTCAGTGCTTCCACCTGTGTTTTTCTCCTGTGTGTAATTAGTTCAGTTATGTCCTGTGTATTTAAGCTCCTGGTTTCTGTCTGCTTTTTGTCTGGTGTTGAAATGTTAACACTGCATGTCTTTCCTGAGTCTCCAGTGGGCCAAGTGTCTAAAGTAAGTGTTTGTTAATTGATCTGTATATTTGGATAATTCCTGAGGTTTGTGTGTTTATGGGAAGAGAGTAAATGTGACACACACAAATGGCTATTAATGGATATTAACCTACACACTGACCAAACTAATCTAatgccaatttcattcattcatttttcttgtcagcttagtccctttattaacccagggtcgccacagcggaatgaaccgccaacttatccagcacgttttttgcatcggatgccctaccagctgcaacccatctctgggaaatatccacaaactcattcatacactacggacaatttatcctacccaattcacctgtaccacatgtctttggactgtgggggaaaccagaagacctggaggaaacccacacgaacgcagggagaacactcaaactccacacaaacgccaaccaagccgaggttcgaaccagcgaccttcttgctgtgaggcggcagcactacctgctgcgccactgcatcacccttcTAACGGCAATTTAGCACAAAAAAGCCAGTGATATCAACACACTACCATGTAAATCTTgcccacactgtaaaataaaacatgacaaaTCAAGAcgacaaatattttatttttattacttttaaatattttagtaagTTAGTATATATTTGTAAGTTATATATAGTTtaacttgatatttttttttttgtcagtttaattgatgtaacttgagatgactagaacaattttattcaccaaaaaaaaaaaaattatatatatatatatatatatatatatatatatatatatatatttatatatatatttatatttatatatatatatatttatatatatatatttatttatatttatatatttttatatatttatatatttatatatatatatatatatatatttatatatatatatatatttatatttatatatatttatatatttatatatatatatatttatatatttatatatatatttatatatttatatatttatatatatatatatttatatatatatatatatatatttattatatttatatatatatttatatatatatatttatatatatatatatatatatatatatatatatttatttatatatatatatatttatttaattttttttttttttttttttttttttttttaacagtgcaaaGACAAATACATTGCTCCTTGCTAAAATCAGAGTAAGAGCAGACTCAAGATTTACATTTTATTAGTATCTTGTGTTGTAAAATATGTAGAGGAATTCAAGGGGTGACACGGTGgatcagtggttggcactgtcgcctcacagcaagaaggtcgctggtttgagtcctggctgggtcaattggcatttctgtgtggtgtttgcatgttctccccagtaGGTGTCGGTTTCCTAGGGGttctctggtttccaccacagtccaaaggcatgcagtataggtgacttgaataaactacattgactgtagtgtatgggcatccgctgtgttaaacatatgctggataagttagcggttcattctgctgtgttgacccctgatcaataaagggattACTAAGCTGagggtgaatgaataaatgaggtaAATTTAAAGCTGACTGTTCCTTTAAAAACGTCAACAACTGTGATGTTCTGTTTTGGTCACATGGTGGCACTGGtctcatttctttaaaaacattgataatTAGATCGCACCAGACTACATTGCAAAAAATATGATGAAAACACACAGAGAAGCACACACAATTTAGTGAACAGAAGTTGCTTATAAAGACATAAATGGTTAGAAAAGTTAAACTTGACACACAGTTGTCTGCTTTTTGTAAAGTTTTAATTCTGGTTGCATCTATACTCCCATGGTCTTTTGGATAACAAAATGTCCTGCACACTTCACAATCTCAGCATCATTACATAATTTGAGGATTGTTTGATGATTGATCATTAACAGCCTAATCAACCCTTTTCACATTTTAGGAAGCAGACGGTACTCTTCTAGGACTGAACAGATAAAACAACTAATAcacattttgaataaataattcatttctgTGACTGTAAAAAAGATAGACAAACTTCTATTACAGTACATTggccagaaaaaaaaagaggaaatatgcTGCATTTGCTGTCATTCCCTTAAGCAGGGTCCATATATAGAAACACTTATGAAGCAGCATTTAGTATGTTTCTGTTATTTAATGCTAGATGAAAATGTGTATAGACCACTTCAATGTGGAGATGCCATGGGCCCCTAAACATTTCCtttttgttgtcaaactattttaataactgtAAGAACAGGCAATTCAATTATATCTCAAtgttaaaacagttgtcataacgttatttatcaatatgtggacttttttaggattcttggaagctatggaaaataaaaatgtaaacaggaaatacattaggaccattgttatagTTTACATCCTTCATAATGcactatacatataaaaaataccCCCCAACCCTCCTGTATGCTGTATACTCTTCAACCACATTAAAATGTAGGTTGTATTTTGAGTTTAAAATATATGCCTTCATGATGTATGCAATAGTAATATATAACTTCTTTAATGTTCCACATTATATTCTCTGGCAGAACCTCAGGGCCCACCACCCAGTGACCCATATATGACCAAGGAGAACCATTGCTTCAGGGCCATCAGAACATGTGACATGATGGCATTATTGTGACTCAGACATAGCAGTATGAAGATGATATAGAGGTTATGGACATGTCCACTAACTGTCCTGAACAAGAAAGTGTTTTTGTCCAAATATTCAGCAATGCATGCGTTCAGGATAAATGATCTCAAAGCATCTAAATCTTGATTGCCTGTGTTAACCGCTGATGATTGTGCTGTAAATTTTAGAAAAACTTTTTATTCTGCTCTGTAAAATGTGTAATGTATGAAAGTGCTTATTTATAATGAATGCTGCAATGAGTTTTGACTGACTGTGTATGGGGTTTGACCCCTGCTCCAAATGCACTGCTATTAGCTGTAACTGAAATGTAAAGAAGGAAGCTCTAGTGATTAGTGTGCTTTATTTTGCACTCGTGGATTATTTCCTGTGGTAAAAAAACAGACTAAATAAAGATTCATTCTCTGAGGTCATTGATAAAAAAA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0004652 polynucleotide adenylyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000630 lncRNA upstream 85937 31054415 ~ 31055182 (+) False XLOC_000367
TCONS_00002845 lncRNA upstream 281595 30855390 ~ 30859524 (+) True XLOC_000365
TCONS_00000626 lncRNA upstream 283194 30853969 ~ 30857925 (+) False XLOC_000365
TCONS_00000621 lncRNA upstream 413500 30723380 ~ 30727619 (+) False XLOC_000364
TCONS_00002844 lncRNA upstream 1061590 30074710 ~ 30079529 (+) False XLOC_000358
TCONS_00002847 lncRNA downstream 210058 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA downstream 210058 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA downstream 211822 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000637 lncRNA downstream 374712 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00003083 lncRNA downstream 865735 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00000633 mRNA upstream 10897 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA upstream 10897 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA upstream 11515 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000629 mRNA upstream 76413 31019165 ~ 31064706 (+) False XLOC_000367
TCONS_00000631 mRNA upstream 77341 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000638 mRNA downstream 428698 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000639 mRNA downstream 493747 31638274 ~ 31643502 (+) False XLOC_000373
TCONS_00000640 mRNA downstream 498696 31643223 ~ 31669901 (+) True XLOC_000373
TCONS_00000641 mRNA downstream 513315 31657842 ~ 31672343 (+) False XLOC_000374
TCONS_00000642 mRNA downstream 513484 31658011 ~ 31672027 (+) True XLOC_000374
TCONS_00000632 other upstream 77269 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 176115 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 913614 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 975054 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1280746 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 562142 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 907086 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 1369462 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1561582 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 2070714 33215241 ~ 33216718 (+) False XLOC_000390

Expression Profile

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