RNA id: TCONS_00000640


Basic Information

Item Value
RNA id TCONS_00000640
length 177
RNA type mRNA
GC content 0.36
exon number 8
gene id XLOC_000373
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 31638274 ~ 31669901 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTTCAGAGGTAGATAAGGTGCAAAGTCATCCCAGTGAAAAGGTATgtatgattaggacatcatttgggaaatatatgaaaaaaTTTAGTTTAACTCAGCTGTCACACTGTAGACTTCTAAAGGgctcagccctgcttagcttcaaacacaaagataataacttgataatatgttac

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0030154 cell differentiation biological_process
GO:0030182 neuron differentiation biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0051781 positive regulation of cell division biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0008284 positive regulation of cell population proliferation biological_process
GO:0003007 heart morphogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0030334 regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0005105 type 1 fibroblast growth factor receptor binding molecular_function
GO:0005111 type 2 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010122-1 Predicted to enable growth factor activity; type 1 fibroblast growth factor receptor binding activity; and type 2 fibroblast growth factor receptor binding activity. Predicted to be involved in several processes, including fibroblast growth factor receptor signaling pathway; heart development; and positive regulation of macromolecule metabolic process. Predicted to act upstream of or within nervous system development and positive regulation of cell division. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and extracellular space. Is expressed in several structures, including anterior macula; brain; midbrain hindbrain boundary neural rod; optic vesicle; and otic vesicle. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 6 with or without anosmia and prostate carcinoma in situ. Orthologous to human FGF8 (fibroblast growth factor 8).

Ensembl:

ensembl_id ENSDART00000182908

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000637 lncRNA upstream 122251 31519239 ~ 31520972 (+) True XLOC_000371
TCONS_00002847 lncRNA upstream 283904 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002846 lncRNA upstream 283904 31354585 ~ 31359319 (+) False XLOC_000370
TCONS_00002848 lncRNA upstream 283904 31356349 ~ 31359319 (+) True XLOC_000370
TCONS_00000636 lncRNA upstream 498696 31141317 ~ 31144527 (+) True XLOC_000369
TCONS_00003083 lncRNA downstream 340361 32010262 ~ 32011794 (+) True XLOC_000380
TCONS_00002849 lncRNA downstream 341979 32011880 ~ 32012378 (+) True XLOC_000381
TCONS_00000651 lncRNA downstream 347536 32017437 ~ 32018115 (+) True XLOC_000383
TCONS_00002850 lncRNA downstream 1847901 33517802 ~ 33518823 (+) True XLOC_000394
TCONS_00000683 lncRNA downstream 2027440 33697341 ~ 33701916 (+) True XLOC_000399
TCONS_00000638 mRNA upstream 44806 31573225 ~ 31598417 (+) True XLOC_000372
TCONS_00000633 mRNA upstream 513001 31110817 ~ 31130222 (+) False XLOC_000368
TCONS_00000634 mRNA upstream 513001 31112436 ~ 31130222 (+) False XLOC_000368
TCONS_00000635 mRNA upstream 513619 31113951 ~ 31129604 (+) True XLOC_000368
TCONS_00000631 mRNA upstream 579445 31054915 ~ 31063778 (+) False XLOC_000367
TCONS_00000643 mRNA downstream 4396 31674297 ~ 31699955 (+) True XLOC_000375
TCONS_00000644 mRNA downstream 36767 31706668 ~ 31722875 (+) False XLOC_000376
TCONS_00000646 mRNA downstream 55253 31725154 ~ 31799359 (+) False XLOC_000377
TCONS_00000647 mRNA downstream 55400 31725301 ~ 31779857 (+) True XLOC_000377
TCONS_00000648 mRNA downstream 194503 31864404 ~ 31867717 (+) True XLOC_000378
TCONS_00000632 other upstream 579373 31057240 ~ 31063850 (+) True XLOC_000367
TCONS_00000628 other upstream 678219 30955925 ~ 30965004 (+) True XLOC_000366
TCONS_00000618 other upstream 1415718 30227391 ~ 30227505 (+) True XLOC_000361
TCONS_00000617 other upstream 1477158 30165953 ~ 30166065 (+) True XLOC_000360
TCONS_00000608 other upstream 1782850 29831759 ~ 29860373 (+) False XLOC_000356
TCONS_00000645 other downstream 36768 31706669 ~ 31722875 (+) True XLOC_000376
TCONS_00000653 other downstream 381712 32051613 ~ 32065030 (+) False XLOC_000384
TCONS_00000657 other downstream 844088 32513989 ~ 32514104 (+) True XLOC_000386
TCONS_00000661 other downstream 1036208 32706109 ~ 32706227 (+) True XLOC_000388
TCONS_00000663 other downstream 1545340 33215241 ~ 33216718 (+) False XLOC_000390