RNA id: LOC113523833


Basic Information

Item Value
RNA id LOC113523833
length 517
RNA type V_segment
GC content 0.49
exon number 2
gene id LOC113523833
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3251385 ~ 3251999 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtgtttatagccctgtgactttaacacttcatgactgagagctgctgctcagcaacttcacccacagcaaccatgactttgatcagcgtcttcatctgcacactggcTCTCTGGACTCAAGGatccagaggtcaggtgactgtgactcaGACTCCTTCACAGCAAACTGTTGTTCCAGGAAACACAGTCACCATCAACTGTAGAACCAGTCTCAGAGTGTATGATGGTAATTTTCTACACTGGTACCtgcagaaacctggagaagctcctaaactcctgatctaTAAGGCTACTCGCTTACACTCAGGGACTCCAGCTCGTTTCACAGGCAGTGGATCTGATACTGActtcactctgaccatcagtggagtccagactgaagatgcaggagattacTACTGCCTTAGTGACCTTCAGATCCGTGGTGTCTCAGTGTTAGAGTGTTGTACAAAAACCTCGGTCAGTGAGAGTGCACAGAGaagcactgctgcagctgggagcgactgcaggtgctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168782 lncRNA upstream 21085 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 35599 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 35608 3211363 ~ 3215777 (+) True LOC117598172
TU168768 lncRNA upstream 52054 3192111 ~ 3199331 (+) False G142521
TU168808 lncRNA downstream 31129 3283128 ~ 3352119 (+) True G142545
TU168817 lncRNA downstream 60762 3312761 ~ 3321168 (+) True G142553
TU168839 lncRNA downstream 127722 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 138906 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 141773 3393772 ~ 3396067 (+) False LOC113523845
XM_034307287.1 mRNA upstream 97539 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 127671 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 190048 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 218859 3014082 ~ 3032526 (+) False LOC113523823
XM_026909884.2 mRNA downstream 41800 3293799 ~ 3308324 (+) True cratb
XM_034307426.1 mRNA downstream 94573 3346572 ~ 3356643 (+) True ppt2b
XM_026909905.2 mRNA downstream 110401 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 132181 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 136264 3388263 ~ 3396036 (+) False LOC113523845
LOC117597933 other upstream 1630 3248524 ~ 3249755 (+) True LOC117597933
trnac-gca_3 other upstream 32165 3219149 ~ 3219220 (+) True trnac-gca_3
trnac-gca_2 other upstream 33896 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_1 other upstream 35337 3215977 ~ 3216048 (+) True trnac-gca_1
LOC117598030 other upstream 52061 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_4 other downstream 1028 3253027 ~ 3253098 (+) True trnac-gca_4
trnac-gca_5 other downstream 2553 3254552 ~ 3254623 (+) True trnac-gca_5
trnac-gca_6 other downstream 3269 3255268 ~ 3255339 (+) True trnac-gca_6
trnac-gca_7 other downstream 4511 3256510 ~ 3256581 (+) True trnac-gca_7
trnac-gca_8 other downstream 5445 3257444 ~ 3257515 (+) True trnac-gca_8

Expression Profile