RNA id: LOC117598033


Basic Information

Item Value
RNA id LOC117598033
length 751
RNA type C_region
GC content 0.50
exon number 3
gene id LOC117598033
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 6837055 ~ 6839420 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGGTAGCTGTGGGTGAAGTTGctgtagcagcagctctgagtcatgaagtgttaaagtcacagcgCTATAAACACTCCCAGAGCACTGAAGCATGTGCTGCCAATGCAAAGTGTCCTCTAAGTATGGAAACACCTTTACCACATTCCCCCAATCTTACTCCATTAAACCTGTTTGTATCACTGTGGGTCACTTTTGGTGGAGGAACCAAACTGTCTGTGGGCCGTCTCACCCAGCCCACTGTGACAGTTCTGCCTCCCTCCAGTGTGGACCTGCAGCAGGAGAAGGTCACACTCATGTGTGTGGCCTATAAGGGCTTCCCCTCGGACTGGAGGCTGAGCTGGAAGGTTGATGGGAGCAGCTTGAGCTCGGGGGAGAGCCACAGCACCGCCGTTCTGCACACGGACGGCCTCTACAGCTGGAGCAGCACGCTGAGCATCCACCCGGAGCAGTGGAGGAACAAGGTGGTGACCTGTGAGGCCTCCAATGACAACCAACCTCCTGTGGTGAGCTCAGTGGACAGAGAGCAGTGCTAAGAGctgtgagctcacacacactttactcagCTCACCTTCTACTGTGTGTTACATGTGGCCCACTTTCATAATTTCATGTGCGGTATTAACGGgagctcacacactcctcagttTAAATCAGCTCTTTTTCTTAATTATCACCTAAatatgtgttaagtgtgtgtatcACTGCAATATCCTGCtttgaattattaataaaagcCTTTGAATCAGTAAa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU170960 lncRNA upstream 6989 6783338 ~ 6830066 (+) False G144353
TU170983 lncRNA upstream 9052 6824401 ~ 6828003 (+) True G144361
TU170981 lncRNA upstream 10147 6807971 ~ 6826908 (+) True G144359
XR_004578857.1 lncRNA upstream 21119 6813767 ~ 6815936 (+) False LOC117598166
XR_004578858.1 lncRNA upstream 22217 6813294 ~ 6814838 (+) True LOC117598166
TU170973 lncRNA downstream 28994 6868414 ~ 6908667 (+) False G144353
XR_004578856.1 lncRNA downstream 31712 6871132 ~ 6874093 (+) True LOC117598165
TU170990 lncRNA downstream 33399 6872819 ~ 6899792 (+) False LOC117598165
XR_004578860.1 lncRNA downstream 36806 6876226 ~ 6877268 (+) True LOC117598168
TU171008 lncRNA downstream 93160 6932580 ~ 6933301 (+) True G144382
XM_026947362.2 mRNA upstream 103141 6692793 ~ 6733914 (+) False LOC113547131
XM_026947363.2 mRNA upstream 103141 6698312 ~ 6733914 (+) True LOC113547131
XM_034307439.1 mRNA upstream 156886 6679484 ~ 6680169 (+) True LOC117598051
XM_026947355.2 mRNA upstream 157729 6605821 ~ 6679326 (+) True LOC113547127
XM_026947313.2 mRNA upstream 243495 6587367 ~ 6593560 (+) False LOC113547098
XM_034307653.1 mRNA downstream 413900 7253320 ~ 7264696 (+) False LOC113529730
XM_034307652.1 mRNA downstream 413901 7253321 ~ 7264696 (+) True LOC113529730
XM_034307651.1 mRNA downstream 413901 7253321 ~ 7264696 (+) False LOC113529730
XM_026918781.2 mRNA downstream 542658 7382078 ~ 7400425 (+) True LOC113529540
XM_034307142.1 mRNA downstream 550079 7389499 ~ 7400424 (+) False LOC113529540
LOC113529732 other upstream 2606 6830592 ~ 6834449 (+) True LOC113529732
TU170969 other upstream 38151 6779989 ~ 6798904 (+) False G144353
LOC117598156 other upstream 38151 6796972 ~ 6798904 (+) True LOC117598156
LOC113547145 other upstream 51618 6783516 ~ 6785437 (+) True LOC113547145
TU170815 other upstream 243450 6587211 ~ 6593605 (+) True LOC113547098
LOC117598034 other downstream 2517 6841937 ~ 6843964 (+) True LOC117598034
LOC117598035 other downstream 15770 6855190 ~ 6856803 (+) True LOC117598035
TU170952 other downstream 16009 6855429 ~ 6856856 (+) False G144353
TU170968 other downstream 23287 6862707 ~ 6870576 (+) False G144353
LOC117598164 other downstream 29839 6869259 ~ 6870503 (+) True LOC117598164

Expression Profile