RNA id: TU167454


Basic Information

Item Value
RNA id TU167454
length 235
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G141642
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 205631 ~ 205865 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aattcctaaacggttaatgcaatatttttgttaaaccccttgaattaaagctgaaagtctacgcttcagtcacatcttgattgcttcatttcaaatccactgtggtggtgtacagaggcaaaattaccaaaactgtgtcactgtcccaatatttatggacctgactgtatttgtCAAAAATTTTGGACACCATTCATCATTTTCCTACCACTTCACAAGTATGTGCCAATTTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167453 lncRNA upstream 1948 203141 ~ 203683 (+) True G141641
TU167437 lncRNA upstream 15386 189829 ~ 190245 (+) True G141625
TU167413 lncRNA upstream 66365 136541 ~ 139266 (+) True G141601
TU167349 lncRNA upstream 100951 47927 ~ 104680 (+) True G141549
TU167360 lncRNA upstream 133055 64691 ~ 72576 (+) True G141558
TU167458 lncRNA downstream 1460 207325 ~ 217714 (+) False G141643
TU167462 lncRNA downstream 1460 207325 ~ 219317 (+) False G141643
TU167463 lncRNA downstream 1460 207325 ~ 209984 (+) True G141643
TU167464 lncRNA downstream 1460 207325 ~ 217714 (+) False G141643
TU167465 lncRNA downstream 1460 207325 ~ 217714 (+) False G141643
XM_026911879.2 mRNA upstream 72224 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 78293 115546 ~ 127338 (+) True fabp10b
XM_026911871.2 mRNA upstream 90695 102820 ~ 114936 (+) False LOC113525374
XM_026911870.2 mRNA upstream 90696 102820 ~ 114935 (+) True LOC113525374
XM_026911872.2 mRNA upstream 116793 67609 ~ 88838 (+) True gpd1c
XM_026911543.2 mRNA downstream 118281 324146 ~ 329984 (+) True LOC113525100
XM_026911544.2 mRNA downstream 232162 438027 ~ 444448 (+) True LOC113525101
XM_026909968.2 mRNA downstream 1256580 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 1290608 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 1290656 1496521 ~ 1505004 (+) True LOC113523877
TU167368 other upstream 109571 93086 ~ 96060 (+) True G141566
TU167477 other downstream 7083 212948 ~ 235521 (+) True G141647
TU167690 other downstream 534984 740849 ~ 742201 (+) False G141823
TU167699 other downstream 561190 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 661804 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 736156 942021 ~ 979635 (+) True LOC117598144

Expression Profile