RNA id: TU167463


Basic Information

Item Value
RNA id TU167463
length 1160
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G141643
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 207325 ~ 260961 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcaGTGTTGACAAAATACCCATAAAAGTCAAAGCTCCTGCCTTTACAAAAATATGTCTTCTACAAAGTGTCCTCTGTGTTCGCTTCTGGAGAGCCGGCTAATAAaacagtgttagtgtgtgtgataacACTGACGACGCACTGCAGCTCcctgacacgcacacacactgctaatcACATCGAGTCGTATCATCTCCATCAAATGATAAATGTTTGTTCCGTGACCTTCAGCTGTGAACAGTGtgtcatctcacacacacacggtgtcgGTGTTATCACGAatccagcagcagcgagcgagaAACCCAAACACCCTGTACACCACATCCACTCTATAAATTAACTTAAATTAGCATTcccacacatgtacacatagaACAGGATTACTGTAAACTGCAAACATAACAAACACTCCTAATGTACAgacgactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcgtgtgtgtttggTCCCTCAAATAGTGAATCCACATTAATTATATGTACAAAAGCACAGCAGCTCAGTGTGATAAAAGGCAACtgagtggatgtgtgtgtgtggatgtgtgggtgtatgtgtgtggatgtgtgggtgtatgtgtgtgtgtgtgtgtgtgtgttgatttgttCAGTTTCACTGAAGATCTCTATCTTCTGATTCCAAAGTGCAACTGAGTATACGAGGACGATCCTGCAGAAAGACAATGTTGACAAGTTGAAATTAGATTTTAAgatgctagctaatgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttacctgactGCACACTCCCCAGTCTACGCTGCAGAGCCTCCAGTCTGGTGATGTAATCAGAGAGTGCTCGATCTGGATCATAATTCTGTAGATGAGAACACAACACTCCTCCATCTGTACTTATCCCTCCATAcctagacacagagagagagagacacagtgagagagatatAGGtagagtgtgcagtgtgtgtgttacctgtgctgcgtggagtgtgcagtgtgtgtgttacctgtgctgtgtggagtgtgcagtgtgtgtgttacctgtgctgtgtggagtgtggtgtgtgtgtgtgtgttacctgtgctgtgtggagtgtgcagtgtgtgtgttacctgtgctgcgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167454 lncRNA upstream 1460 205631 ~ 205865 (+) True G141642
TU167453 lncRNA upstream 3642 203141 ~ 203683 (+) True G141641
TU167437 lncRNA upstream 17080 189829 ~ 190245 (+) True G141625
TU167413 lncRNA upstream 68059 136541 ~ 139266 (+) True G141601
TU167360 lncRNA upstream 134749 64691 ~ 72576 (+) True G141558
TU167473 lncRNA downstream 770 210754 ~ 211614 (+) True G141644
TU167497 lncRNA downstream 42612 252596 ~ 253731 (+) True G141664
TU167502 lncRNA downstream 62042 272026 ~ 272294 (+) True G141669
TU167505 lncRNA downstream 68359 278343 ~ 278983 (+) True G141672
TU167507 lncRNA downstream 71612 281596 ~ 281856 (+) True G141674
XM_026911879.2 mRNA upstream 73918 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 79987 115546 ~ 127338 (+) True fabp10b
XM_026911871.2 mRNA upstream 92389 102820 ~ 114936 (+) False LOC113525374
XM_026911870.2 mRNA upstream 92390 102820 ~ 114935 (+) True LOC113525374
XM_026911872.2 mRNA upstream 118487 67609 ~ 88838 (+) True gpd1c
XM_026911543.2 mRNA downstream 114162 324146 ~ 329984 (+) True LOC113525100
XM_026911544.2 mRNA downstream 228043 438027 ~ 444448 (+) True LOC113525101
XM_026909968.2 mRNA downstream 1252461 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 1286489 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 1286537 1496521 ~ 1505004 (+) True LOC113523877
TU167368 other upstream 111265 93086 ~ 96060 (+) True G141566
TU167477 other downstream 2964 212948 ~ 235521 (+) True G141647
TU167690 other downstream 530865 740849 ~ 742201 (+) False G141823
TU167699 other downstream 557071 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 657685 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 732037 942021 ~ 979635 (+) True LOC117598144

Expression Profile