RNA id: TU167507


Basic Information

Item Value
RNA id TU167507
length 261
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G141674
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 281596 ~ 281856 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAGACATCTTcctttgttaaatctaaaacactgactctacagctcgctgtttgagaaagaaaacacacatcactcacCCGAGTTAGCTGcgtagcttgttgctaacaaaatacgAACATGGGGCGTCAATTTTCCCGCTACTTCTGTCGAACGTGCCGAAGTTGACAATGACGTAAGCGATTTCCCGCTTAGACGTAATGCAGCatcatattttacataaacttgttcatctgacttttcaaacctgAAACAACACGGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167505 lncRNA upstream 2613 278343 ~ 278983 (+) True G141672
TU167502 lncRNA upstream 9302 272026 ~ 272294 (+) True G141669
TU167466 lncRNA upstream 20635 207325 ~ 260961 (+) False G141643
TU167511 lncRNA downstream 561 282417 ~ 297937 (+) False G141675
TU167509 lncRNA downstream 11315 293171 ~ 297937 (+) True G141675
TU167510 lncRNA downstream 11315 293171 ~ 386543 (+) False G141675
TU167515 lncRNA downstream 16233 298089 ~ 310377 (+) True G141679
TU167523 lncRNA downstream 62413 344269 ~ 445499 (+) True G141687
XM_026911879.2 mRNA upstream 148189 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 154258 115546 ~ 127338 (+) True fabp10b
XM_026911871.2 mRNA upstream 166660 102820 ~ 114936 (+) False LOC113525374
XM_026911870.2 mRNA upstream 166661 102820 ~ 114935 (+) True LOC113525374
XM_026911872.2 mRNA upstream 192758 67609 ~ 88838 (+) True gpd1c
XM_026911543.2 mRNA downstream 42290 324146 ~ 329984 (+) True LOC113525100
XM_026911544.2 mRNA downstream 156171 438027 ~ 444448 (+) True LOC113525101
XM_026909968.2 mRNA downstream 1180589 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 1214617 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 1214665 1496521 ~ 1505004 (+) True LOC113523877
TU167477 other upstream 46075 212948 ~ 235521 (+) True G141647
TU167368 other upstream 185536 93086 ~ 96060 (+) True G141566
TU167690 other downstream 458993 740849 ~ 742201 (+) False G141823
TU167699 other downstream 485199 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 585813 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 660165 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 728813 1010669 ~ 1061264 (+) False G141825

Expression Profile