RNA id: TU167564


Basic Information

Item Value
RNA id TU167564
length 212
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G141722
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 478072 ~ 608632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

caccatttacgtttacaaactgataacgatcagtcaaataagacctgagccaggaaagggccgttcccttaatgcctactacattttccagtctatcgaggagaatagcatgatcaatggtatcaaaagctgcactaaggtcaagcagcaccagcaaggagacacaaccctgatcagaggccagcagtaggtcatttaccactttaaccagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167523 lncRNA upstream 32573 344269 ~ 445499 (+) True G141687
TU167510 lncRNA upstream 91529 293171 ~ 386543 (+) False G141675
XR_004578776.1 lncRNA upstream 98945 376387 ~ 379127 (+) True LOC117598045
TU167531 lncRNA upstream 121274 355404 ~ 356798 (+) True G141694
TU167515 lncRNA upstream 167695 298089 ~ 310377 (+) True G141679
TU167694 lncRNA downstream 65600 674232 ~ 725725 (+) False G141823
TU167692 lncRNA downstream 67042 675674 ~ 742201 (+) True G141823
XR_004578676.1 lncRNA downstream 67192 675824 ~ 677329 (+) True LOC117597935
XR_004578815.1 lncRNA downstream 115927 724559 ~ 725725 (+) True LOC113525695
XR_004578764.1 lncRNA downstream 132197 740829 ~ 742229 (+) True LOC117598010
XM_026911544.2 mRNA upstream 33624 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 148088 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 344665 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 350734 115546 ~ 127338 (+) True fabp10b
XM_026911871.2 mRNA upstream 363136 102820 ~ 114936 (+) False LOC113525374
XM_026909968.2 mRNA downstream 853813 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 887841 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 887889 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 926235 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 929527 1538159 ~ 1540467 (+) True LOC113523893
TU167477 other upstream 242551 212948 ~ 235521 (+) True G141647
TU167368 other upstream 382012 93086 ~ 96060 (+) True G141566
TU167690 other downstream 132217 740849 ~ 742201 (+) False G141823
TU167699 other downstream 158423 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 259037 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 333389 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 402037 1010669 ~ 1061264 (+) False G141825

Expression Profile