RNA id: TU167588


Basic Information

Item Value
RNA id TU167588
length 1428
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G141738
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 588877 ~ 590364 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGAATTTAacttggtatgaagcttccagaacacacatgcaaataagatggcaagacatattattattatttgtaaatttgatTATTATAAGAGAGAACAGGCTTAAATGGAACAGATATATGGACAGATATAATACTGTGCAAGGTGAAGGCAATGAGGTGAAGGCAGTGGCACAAGCATTAAGGATATGTGTACAGGTAATACGGTAAAGAATGAATTTACATACTGCACAAAAAATTGTATCCACAGAGAAGTAATACATTAAGAAGGATCTAGAAGTAGTTAACTGTTCCTGAGGGAAATGGCTTGTGGGAAAACGCTGTTCTTGTGCCTGCTTGTTCCAGTGGTCAGGGCTCTGAGGCGCCGGCCGCAGGGCAACAGGACTTACTACAGGCTGGGCAGATGTTAGTTTCTGCCTGTATGAACTAGGCAGTGATCGGAGAGTCCCAAAGCTGCTCTGGGAACCTCCTTTGCTCTGTTAAAATCAGCAAGAATAATAGTAAGTGAGTTGGGatgatgtctctgtgtgtgtgtgtaatctgatcAGCCAGCTTTTGCAGCGCTGTGCTCGTGCAGGCTTGAGGAGGGATGTAAACATTCACCACAATGAACGAGGAAAACTCGCTGCGGCGAATAAAAAGGCTTGCAGCTGATGAGGAGCGCGTCTGTGTCAGCACAGCATATCTTCTTCAACACTGTTATATCAGTGCACCAACTGCACCAACCAGCTGGAAGCCCGGCAGATGTATagcccatttatagttacatttattgctgTGGAATGTGGGTGAAACTTacgtcgcttacgttatagcagctgtaaacagttgtttcctcaccagcctcttttttctctctcttcaagttaataagataaaaaacaaacacagcttgttacgcatgaaaccgcaaagaagcgtaaactcctctgtcctgaagacgtcggaaaacttaaagttccagctttacctctgactgttacaaagcgctgacactggagactccttccataaatgttacataaatgtctccttactttaagaagaCTTCATATCAGTGATTTTTCCTACTatagaaaacattttcagataatttaaaaatgataatcaatatacaatacaataaaaagaagactttaaaatgcttcaCAGATTGAGGCAGTGATCTCAAGGATCCAAGTTTGGCACAGGTGAAAAAAATACTGTTCTGAGACTGAATACTGTGTGATATTCCACATATTCTGAGCTGAAAAGCTTATAGAACAGACGTTAATGTTCGTCCTGAGAAAAAGTGTTTGTTCTTCATATCATAATGAAAGGAATACAGTTTGCCAGTTTGCTTGGAGTGTAATATACTGCACTGCAGATTATGTGCCTGGGTCCTGATGGGAATATCGTACATCATTCCGGATCAAAACCACAGAacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167552 lncRNA upstream 86471 415274 ~ 502406 (+) True G141711
TU167551 lncRNA upstream 86471 436850 ~ 502406 (+) False G141711
TU167576 lncRNA upstream 95459 492911 ~ 493418 (+) True G141726
TU167523 lncRNA upstream 143378 344269 ~ 445499 (+) True G141687
XR_004578875.1 lncRNA downstream 10509 600873 ~ 608245 (+) True LOC117598182
TU167694 lncRNA downstream 83868 674232 ~ 725725 (+) False G141823
TU167692 lncRNA downstream 85310 675674 ~ 742201 (+) True G141823
XR_004578676.1 lncRNA downstream 85460 675824 ~ 677329 (+) True LOC117597935
XR_004578815.1 lncRNA downstream 134195 724559 ~ 725725 (+) True LOC113525695
XM_026911544.2 mRNA upstream 144429 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 258893 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 455470 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 461539 115546 ~ 127338 (+) True fabp10b
XM_026911870.2 mRNA upstream 473942 102820 ~ 114935 (+) True LOC113525374
XM_026909968.2 mRNA downstream 872081 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 906109 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 906157 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 944503 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 947795 1538159 ~ 1540467 (+) True LOC113523893
TU167477 other upstream 353356 212948 ~ 235521 (+) True G141647
TU167368 other upstream 492817 93086 ~ 96060 (+) True G141566
TU167690 other downstream 150485 740849 ~ 742201 (+) False G141823
TU167699 other downstream 176691 767055 ~ 812185 (+) True G141824
LOC117598023 other downstream 277305 867669 ~ 869091 (+) True LOC117598023
TU167732 other downstream 351657 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 420305 1010669 ~ 1061264 (+) False G141825

Expression Profile