RNA id: TU167707


Basic Information

Item Value
RNA id TU167707
length 550
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G141824
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 767055 ~ 895584 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggtcactgtAGTGTAACAGAGGTTTTTGTACGACGGCTTCATTAGAATGTATCACTGTGGCTCACTTTCGGTGGAGGAACCAAACTCATCATCACCGGTCCCACGGTGAAGCCCTCCGTGTCtctgctccctccctcctctctgcagctgtctgagggatcggcctcgctgctctgcctgctgtctgCCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCCCAGGTGAAGGACGGGGTTCTGACCAgcgcagaagaacagaagaaggacggttacacacgcagcagcaccctgaccctcagcaaagcactctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGCGTCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGAAGCCTAACAGCTCCAAGATACAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167703 lncRNA upstream 8511 864719 ~ 877909 (+) False G141824
XR_004578844.1 lncRNA upstream 35430 849559 ~ 850990 (+) True LOC117598141
TU167729 lncRNA upstream 35459 832092 ~ 850961 (+) True G141826
TU167752 lncRNA upstream 39930 831285 ~ 846490 (+) True G141847
XR_004578851.1 lncRNA upstream 52692 832226 ~ 833728 (+) True LOC117598146
XR_004578840.1 lncRNA downstream 8199 903783 ~ 905253 (+) True LOC117598137
TU167758 lncRNA downstream 8209 903793 ~ 905246 (+) False LOC117598137
TU167759 lncRNA downstream 22415 917999 ~ 919272 (+) True G141854
TU167718 lncRNA downstream 43131 938715 ~ 1061264 (+) False G141825
XR_004578849.1 lncRNA downstream 46139 941723 ~ 957406 (+) False LOC117598144
XM_026911544.2 mRNA upstream 441972 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 556436 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 753013 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 759082 115546 ~ 127338 (+) True fabp10b
XM_026911870.2 mRNA upstream 771485 102820 ~ 114935 (+) True LOC113525374
XM_026909968.2 mRNA downstream 566861 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 600889 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 600937 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 639283 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 642575 1538159 ~ 1540467 (+) True LOC113523893
LOC117598023 other upstream 17329 867669 ~ 869091 (+) True LOC117598023
TU167699 other upstream 74235 767055 ~ 812185 (+) True G141824
TU167690 other upstream 144219 740849 ~ 742201 (+) False G141823
TU167477 other upstream 650899 212948 ~ 235521 (+) True G141647
TU167368 other upstream 790360 93086 ~ 96060 (+) True G141566
TU167732 other downstream 46437 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 115085 1010669 ~ 1061264 (+) False G141825
LOC117598132 other downstream 129540 1025124 ~ 1025991 (+) True LOC117598132
LOC117598117 other downstream 131403 1026987 ~ 1081479 (+) True LOC117598117
LOC117598126 other downstream 207048 1102632 ~ 1103263 (+) True LOC117598126

Expression Profile