RNA id: TU167721


Basic Information

Item Value
RNA id TU167721
length 247
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G141825
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 938715 ~ 1209873 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGGGAAAAGGGGAGGAGTTTGTCTGTACGGTCTCCCATGCCGGCGTCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGAAGCCTAACAGCTCCAAGATAGAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctgaaataaagcttcattttggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167804 lncRNA upstream 9377 1186282 ~ 1190727 (+) True G141892
TU167722 lncRNA upstream 27760 1171224 ~ 1172344 (+) False G141825
TU167718 lncRNA upstream 138840 938715 ~ 1061264 (+) False G141825
XR_004578842.1 lncRNA upstream 206635 991997 ~ 993469 (+) True LOC117598139
XR_004578849.1 lncRNA upstream 242698 941723 ~ 957406 (+) False LOC117598144
XR_004578843.1 lncRNA downstream 6396 1216269 ~ 1217424 (+) True LOC117598140
TU167733 lncRNA downstream 6405 1216278 ~ 1217425 (+) False LOC117598140
TU167851 lncRNA downstream 103708 1313581 ~ 1319559 (+) True G141930
TU168026 lncRNA downstream 218128 1428001 ~ 1832071 (+) False G142051
TU168048 lncRNA downstream 267107 1476980 ~ 1478639 (+) True G142058
XM_026911544.2 mRNA upstream 755656 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 870120 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 1066697 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 1072766 115546 ~ 127338 (+) True fabp10b
XM_026911870.2 mRNA upstream 1085169 102820 ~ 114935 (+) True LOC113525374
XM_026909968.2 mRNA downstream 252572 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 286600 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 286648 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 324994 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 328286 1538159 ~ 1540467 (+) True LOC113523893
TU167713 other upstream 27760 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 96841 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 118625 1026987 ~ 1081479 (+) True LOC117598117
TU167711 other upstream 138840 1010669 ~ 1061264 (+) False G141825
TU168100 other downstream 401638 1611511 ~ 1613336 (+) True G142093
TU168103 other downstream 405305 1615178 ~ 1620661 (+) False LOC113523891
TU168470 other downstream 905167 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 1060177 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 1060577 2270450 ~ 2271586 (+) False LOC117597926

Expression Profile