Gene
RNA
| Item | Value |
|---|---|
| RNA id | XR_004578849.1 |
| length | 364 |
| lncRNA type | inter_gene |
| GC content | 0.55 |
| exon number | 3 |
| gene id | LOC117598144 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 941723 ~ 979635 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU167759 | lncRNA | upstream | 22451 | 917999 ~ 919272 (+) | True | G141854 |
| XR_004578840.1 | lncRNA | upstream | 36470 | 903783 ~ 905253 (+) | True | LOC117598137 |
| TU167758 | lncRNA | upstream | 36477 | 903793 ~ 905246 (+) | False | LOC117598137 |
| XR_004578848.1 | lncRNA | upstream | 46119 | 886352 ~ 895604 (+) | True | LOC117598143 |
| XR_004578842.1 | lncRNA | downstream | 34591 | 991997 ~ 993469 (+) | True | LOC117598139 |
| TU167722 | lncRNA | downstream | 213818 | 1171224 ~ 1172344 (+) | False | G141825 |
| TU167801 | lncRNA | downstream | 221562 | 1178968 ~ 1222490 (+) | True | G141889 |
| TU167804 | lncRNA | downstream | 228876 | 1186282 ~ 1190727 (+) | True | G141892 |
| TU167721 | lncRNA | downstream | 242698 | 1200104 ~ 1209873 (+) | False | G141825 |
| XM_026911544.2 | mRNA | upstream | 497275 | 438027 ~ 444448 (+) | True | LOC113525101 |
| XM_026911543.2 | mRNA | upstream | 611739 | 324146 ~ 329984 (+) | True | LOC113525100 |
| XM_026911879.2 | mRNA | upstream | 808316 | 127708 ~ 133407 (+) | True | LOC113525382 |
| XM_034307532.1 | mRNA | upstream | 814385 | 115546 ~ 127338 (+) | True | fabp10b |
| XM_026911870.2 | mRNA | upstream | 826788 | 102820 ~ 114935 (+) | True | LOC113525374 |
| XM_026909968.2 | mRNA | downstream | 505039 | 1462445 ~ 1473080 (+) | True | LOC113523903 |
| XM_026909931.2 | mRNA | downstream | 539067 | 1496473 ~ 1505004 (+) | False | LOC113523877 |
| XM_026909932.2 | mRNA | downstream | 539115 | 1496521 ~ 1505004 (+) | True | LOC113523877 |
| XM_026909950.2 | mRNA | downstream | 577461 | 1534867 ~ 1540467 (+) | False | LOC113523893 |
| XM_034307151.1 | mRNA | downstream | 580753 | 1538159 ~ 1540467 (+) | True | LOC113523893 |
| LOC117598023 | other | upstream | 72632 | 867669 ~ 869091 (+) | True | LOC117598023 |
| TU167699 | other | upstream | 129538 | 767055 ~ 812185 (+) | True | G141824 |
| TU167690 | other | upstream | 199522 | 740849 ~ 742201 (+) | False | G141823 |
| TU167477 | other | upstream | 706202 | 212948 ~ 235521 (+) | True | G141647 |
| TU167368 | other | upstream | 845663 | 93086 ~ 96060 (+) | True | G141566 |
| TU167711 | other | downstream | 53263 | 1010669 ~ 1061264 (+) | False | G141825 |
| LOC117598132 | other | downstream | 67718 | 1025124 ~ 1025991 (+) | True | LOC117598132 |
| LOC117598117 | other | downstream | 69581 | 1026987 ~ 1081479 (+) | True | LOC117598117 |
| LOC117598126 | other | downstream | 145226 | 1102632 ~ 1103263 (+) | True | LOC117598126 |
| TU167713 | other | downstream | 172070 | 1129476 ~ 1172344 (+) | True | G141825 |
