RNA id: XR_004578840.1


Basic Information

Item Value
RNA id XR_004578840.1
length 573
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id LOC117598137
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 903783 ~ 905253 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtggtcactgtAGTGTAACAGAGGTTTTTGTATGACGGCTTCATTAGAATGTATCACTGTGGTTCACTTTCGGTGGAGGAACCAAACTCATCATCACCGGTCCCACGGTGAAGCCCTCCGTGTCtctgctccctccctcctctctgcagctgtctgagggatcggcctcgctgctctgcctgctgtctgCCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCCCAGGTGAAGGACGGGGTTCTGACCAgcgcagaagaacagaagaaggacggttacacacgcagcagcaccctgaccctcagcaaagcactctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGCGTCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGAAGCCTAACAGCTCCAAGATACAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctgaaataaagcttccttttgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578848.1 lncRNA upstream 8179 886352 ~ 895604 (+) True LOC117598143
TU167696 lncRNA upstream 8199 846559 ~ 895584 (+) False G141824
TU167705 lncRNA upstream 8199 846559 ~ 895584 (+) False G141824
TU167707 lncRNA upstream 8199 886420 ~ 895584 (+) False G141824
TU167703 lncRNA upstream 25874 864719 ~ 877909 (+) False G141824
TU167759 lncRNA downstream 12746 917999 ~ 919272 (+) True G141854
TU167718 lncRNA downstream 33462 938715 ~ 1061264 (+) False G141825
XR_004578849.1 lncRNA downstream 36470 941723 ~ 957406 (+) False LOC117598144
XR_004578842.1 lncRNA downstream 86744 991997 ~ 993469 (+) True LOC117598139
TU167722 lncRNA downstream 265971 1171224 ~ 1172344 (+) False G141825
XM_026911544.2 mRNA upstream 459335 438027 ~ 444448 (+) True LOC113525101
XM_026911543.2 mRNA upstream 573799 324146 ~ 329984 (+) True LOC113525100
XM_026911879.2 mRNA upstream 770376 127708 ~ 133407 (+) True LOC113525382
XM_034307532.1 mRNA upstream 776445 115546 ~ 127338 (+) True fabp10b
XM_026911870.2 mRNA upstream 788848 102820 ~ 114935 (+) True LOC113525374
XM_026909968.2 mRNA downstream 557192 1462445 ~ 1473080 (+) True LOC113523903
XM_026909931.2 mRNA downstream 591220 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA downstream 591268 1496521 ~ 1505004 (+) True LOC113523877
XM_026909950.2 mRNA downstream 629614 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA downstream 632906 1538159 ~ 1540467 (+) True LOC113523893
LOC117598023 other upstream 34692 867669 ~ 869091 (+) True LOC117598023
TU167699 other upstream 91598 767055 ~ 812185 (+) True G141824
TU167690 other upstream 161582 740849 ~ 742201 (+) False G141823
TU167477 other upstream 668262 212948 ~ 235521 (+) True G141647
TU167368 other upstream 807723 93086 ~ 96060 (+) True G141566
TU167732 other downstream 36768 942021 ~ 979635 (+) True LOC117598144
TU167711 other downstream 105416 1010669 ~ 1061264 (+) False G141825
LOC117598132 other downstream 119871 1025124 ~ 1025991 (+) True LOC117598132
LOC117598117 other downstream 121734 1026987 ~ 1081479 (+) True LOC117598117
LOC117598126 other downstream 197379 1102632 ~ 1103263 (+) True LOC117598126

Expression Profile