RNA id: TU168022


Basic Information

Item Value
RNA id TU168022
length 3249
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G142051
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1428001 ~ 1832071 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAAATTTTGAATGTCATAAATACAATCAAACTGCAAAATATCATTGGATTGCATTTGAGTTTTAGCATAGAACTGATTGACTGACTTTAGATGGCACCGAGCGAAGAGTAATGTTCTGATGTTTTAACCTCAAACTGTaaatttatgaagaaaaaaacattccagtaacACTGGAGATACtcaaaagtaaaacaaacaaacaaacaaataaaaaactcaaCACACATATAAAACTGTGGACAGAGCAAgcaaaaagcacattttatttaggaaatactccaagtaaataaaacataacttgAAAGTAAATGACCAGCATTATTGCCTCGTAAACACAGGTATGTGGTTCTGCTTCTCAATACCATTTGGATTTAAACTGTACCTTGTCTTTTTAAACCCTTGTTTTCAACaaagaggtttttaaaaacaaaaattcaatTTCCATCATAAAACACAATTatcaataaagtaaaataaaaaagtcagaaATTTAGCCATTTAAATTCATATGACGTAGTCAATAATACTTACTTATTaccataaaaatacacactcatAATGAAACGAACACTCAAAGCAAAAGACTGGGAAAAGACTAGCTATATTGAACAAGACTGGATAAGATATTCATAGTAAAATACTTACAGTAGTCTACATACTGTGATTTCAGTAACTGTTCATAATAATGATTTGACCTGAAATgacttgtgaaaaataaaagtctACAGTGTAACAAACACTCAAACACTATATAAAAAACCCAACGTTCTTTCAATCCACTCAGTATTCTCTCCACATGCCGTTCTTCACGTTTATTGTAAATGCGTAGGGATTACTgtgtatgaaatattttctctgtGAACCCTCACAGAGTTGAACATGTGACCTGTAACTGTCGGAAGCTATAGTGgttcaagaagaaaaaagagaatgcAAGAAAATACATGTGCATGAGATACTACAGAGGTACAGAGCCATGGGATCGATTCTTTAAGGCTTTTTCTTTAAAGAGGAATAATAACATCACACAAAGACTGCTGGTGTCCTTCTGCAGAGTCTCCATCGAAAGTGTACTAACATGCTGTATATGCATTTGGTACACCAGCTGGGCACCGCCCAAAAGATTGTCGGCTGCCCTCTCCCCACATTAGAAAACTTACACAGCTCCTGTTGTCTTAAAAAAGCACAGAACATAGCTAAAGACACTTCAGATCCTGGACACTCCCTGTTGGAACTGTTGCCTTCTGGCAGATGGCACAGGTTAATTAATGCAAGGACGAATAGACTCAAGCACAGTTTTTATCCAATTGCAATAACTGCTCTGAATGCTGCTAAAAAATAACATACAATATTTCAATCTGTATCTTGCTGGATCTGTGAAACAGTGGATGTATGTGTAGGATGTAGAATGATGttcaacatttttatatattgcatgtgtgtgggtATGCTCATGTGCAGTTTAAggtatatttattcttatttattcatatttttagcaattctaaagtatttaaattattaaattattatattttagtattatcatattcaattattatattttaggaTTGtcctaatatttaaattattatattttagcatTGTACTagcatttaaattattatattttagcatTGTCCTAGCATTTAAATTATTATGCTTTTTAACACTCAGTGTGATTAGGCACTGACTGAAGAGCACTTTTAAATTTCGTTGTACCcgtgacaatgacaataaaggcatATTCTAAAAAGCTCTGGATAAGGAGACACACAGATAATTAGCTGCTCCTCCATTCTAACTAGCAAATTTAATCTTACGAAATATTCGAGAGCTTATGTGATTGTTTGGGTCAAATTTGAAGCTGAGTGAGCTTTGAGCGCAGCGCCAAGACGTTAAATCCGAGCGGTGTGTGATGCCCACTGGTTCTCTCCATGGGGAAACAATGACTGCGTTTACacgcacatcaaattccatttaaggtctatatttgggttgcagccttattccgaatacgatgtttatatgcgtacaggcatcggaatattcctgtatacagggtttggttgttgtaagtttgcCTGAGTTGCcgttcctaaatacctagcctactgCTAAGCacctgttagcacccacaattccttgcgggcTGAGCTGCGAATATATCtcatttcagtggattttctgaataaagtgtttacatGAAACACATTTCCGATTAAAATAGGTGTATTCCAGGGAttggcgtctgccaaatgccataaatgtaaatgtaatgtaaatgtagttggaatttggggaatcagaatattgtcttaatctgaatcaggcaatCGGATTGCGGTGTTTAGATGCACGACTCAAAACTAATTAGAATATCGCCAAAGTCTGATTAATAcaggaatattgatgtgcatgtaaacgtagccactgACTTTGTTGGTGCAAAATGGTTTAGCTGCTGATCATCTGTGGTCACCTTAACACAATCTGATCCCGATCATTTTGTACAAAACCATTTAACTTTGAAGTTTTCAAAACATAATGCAATTTTATACTTCATACATTTCTTGCAAATCTTGCTGTGGATGGAAAAGTAGGTAAAACATTAACATCAATATTATTTGATATCCGATATTATTTGGTACATCAGTGGTACATTTGTCAATTCTCCACACTCATATCTTCAGGTTTGAGATCCTTGTCTTCAtgCCTTTTTAAGGAAAAAGATGACTCCTGCAACCACAGCCAGCGTAAGCACAGCTCCAATCACTGCTCCGATGATAGTACTCGGACCTGTGTCACATTCTTTGCATTGTTCTtgcaaaaataagaacaataaGAGCAAGGTAACCGATTACACTGATTACATTTTcgaatttatttttctttgcactGCTGTTTTTTATTGATATGAGTTGTAAGTAGAACAATAAGGCTCAGTAACGGTACTTCACTTACCCCCACCTACGATTATAGGCTTTTCAAGACTGCTGTGGGTCACATAACAATCGTAAAGTGCTTTGTCATCCTCCACAATGTTCACACTCTTCCTCAGCTGGTAGGTGCCGTCACCATTGGGTCTGACTCCTGAAGATGTTACCAGATGTTCAGGTAGAGAAGTTCTGAGCTTTCTCACCTGCATCTGTACATCTGGAGGGTAGAAACCTGTGGCCAGGCAGGTCAGGGTCAACTTGCCGGGGTCACGTACTGATTTCTTTGCAAGCAGATGTACATCTGGTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168112 lncRNA upstream 26897 1662088 ~ 1687665 (+) True G142097
TU168085 lncRNA upstream 154671 1558890 ~ 1559891 (+) False dus3l
TU168071 lncRNA upstream 198887 1509983 ~ 1515675 (+) True G142074
TU168052 lncRNA upstream 231915 1480710 ~ 1482647 (+) True G142062
TU168048 lncRNA upstream 235923 1476980 ~ 1478639 (+) True G142058
TU168046 lncRNA downstream 9193 1784404 ~ 1819780 (+) True G142056
TU168140 lncRNA downstream 9566 1784777 ~ 1788436 (+) True G142113
TU168141 lncRNA downstream 9566 1784777 ~ 1788436 (+) False G142113
TU168041 lncRNA downstream 12957 1788168 ~ 1795910 (+) False G142053
TU168042 lncRNA downstream 44319 1819530 ~ 1832485 (+) True G142054
XM_034307416.1 mRNA upstream 31769 1647724 ~ 1682793 (+) True slc44a4
XM_034307593.1 mRNA upstream 68013 1622766 ~ 1646549 (+) True ehmt2
XM_034307389.1 mRNA upstream 91772 1615143 ~ 1622790 (+) True LOC113523891
XM_026909918.2 mRNA upstream 116804 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 154652 1548257 ~ 1559910 (+) True dus3l
XM_034307177.1 mRNA downstream 198321 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA downstream 198321 1973532 ~ 1998149 (+) False LOC113524921
XM_034307178.1 mRNA downstream 198321 1973532 ~ 1998149 (+) False LOC113524921
XM_034307180.1 mRNA downstream 198321 1973532 ~ 1998149 (+) False LOC113524921
XM_026911309.2 mRNA downstream 198321 1973532 ~ 1978462 (+) True LOC113524921
TU168103 other upstream 93901 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 101226 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 542218 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 611299 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 633083 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 339829 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 494839 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 495239 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 503868 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 512887 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile