RNA id: TU168042


Basic Information

Item Value
RNA id TU168042
length 351
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G142054
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1819530 ~ 1832485 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCATGAACTTGTTGAGCCAgtccacacactcTTTCTCAGCTCTTCTTTTCCGTAATCCATGAACTTGTTGAGCCAgtccacacactctttctccagATAGCCCTTGGTGTACTGGTTAAGGATGGGCACATCATCCCATTTCCTTTTGGTCGGCTCAGCAGCTGTGACTGGAGCAATCCACCTCGAGTTTACCTCATCGAAGGAGAGGAACTCAGACCCATCGTAGCTGTACTCATCAACTCCTCTCACAAATTTAATATTCCCATCTGTACCTTCATCAACCACACAGCCATGTCtccactgaagaacatgaagGTCTGAAATGGAGACGGTGCAGTGAAGATAATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168029 lncRNA upstream 126 1761884 ~ 1819404 (+) False G142051
TU168040 lncRNA upstream 23620 1762622 ~ 1795910 (+) False G142053
TU168041 lncRNA upstream 23620 1788168 ~ 1795910 (+) False G142053
TU168027 lncRNA upstream 23980 1703628 ~ 1795550 (+) False G142051
TU168140 lncRNA upstream 31094 1784777 ~ 1788436 (+) True G142113
TU168150 lncRNA downstream 18987 1851472 ~ 1856350 (+) True G142122
TU168162 lncRNA downstream 37064 1869549 ~ 1870509 (+) True G142134
TU168186 lncRNA downstream 70678 1903163 ~ 1904434 (+) True G142157
TU168193 lncRNA downstream 115396 1947881 ~ 1950347 (+) True G142164
XR_004578671.1 lncRNA downstream 166771 1999256 ~ 2003137 (+) True LOC117597929
XM_034307416.1 mRNA upstream 136737 1647724 ~ 1682793 (+) True slc44a4
XM_034307593.1 mRNA upstream 172981 1622766 ~ 1646549 (+) True ehmt2
XM_034307389.1 mRNA upstream 196740 1615143 ~ 1622790 (+) True LOC113523891
XM_026909918.2 mRNA upstream 221772 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 259620 1548257 ~ 1559910 (+) True dus3l
XM_034307177.1 mRNA downstream 141047 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA downstream 141047 1973532 ~ 1998149 (+) False LOC113524921
XM_034307178.1 mRNA downstream 141047 1973532 ~ 1998149 (+) False LOC113524921
XM_034307180.1 mRNA downstream 141047 1973532 ~ 1998149 (+) False LOC113524921
XM_026911309.2 mRNA downstream 141047 1973532 ~ 1978462 (+) True LOC113524921
TU168103 other upstream 198869 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 206194 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 647186 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 716267 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 738051 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 282555 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 437565 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 437965 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 446594 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 455613 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile