RNA id: XM_034307388.1


Basic Information

Item Value
RNA id XM_034307388.1
length 2133
RNA type mRNA
GC content 0.50
exon number 14
gene id dus3l
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1548257 ~ 1559910 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATACAcgaaataaacaaatgcatgaaTGCGCGAGGATTTTAACATTTATCCGAGCTTTAACTTTAACTGTGGATCAAAAGCAGCAGCTTTAAAGTTTATTAGCGGAACTTTTATTAAACGgaTGGAGGCTGGTGATGTGAACAGTGCAGAGACCAGCACATTGCAGACTGCAGACAGAGGAGAAGCAGCTCTGAAGATACAGTACGTCACAAACAAGGAGAAGTTTTACGAGTTCCTGGCTGATGGATTGAAGAGTGAGAAAGCTGAGGATGGAAAAACATCAACTGAAGCTCCTGCAGATGGAACGGAGGAACCGAGCGGAGAACCGGAGACGAAGAGGCGGAAAGTGGACGGTGATGAGCAGacggaggagaagaagaaacgGAGAGGCCAGAACAAGTCGAGACCTCACCTGAAACCTCACAGCTACGAGGATCGCAGACTCTGCCCCTCACTCATACGGGAGTCTGAGAGGAAGTGTTTCTATGGCGAGAAGTGTAAGTTCATCCACGACGTGGCTGATTACATGTCCACCAAACCGGCGGATCTGGGAGACGCCTGTTACCTTTACGACACCTTCGGCAGatgtccGTATGGAGTCACCTGCAGGTTCGCTAAAGCTCACACAGGCCCCGACTACAAAAACCTGGTGAACGAGGAGCTCTGTAAAAGCCTGGAGATTAAAGAAACCGTGCGGAACCATCTGGATAAAGAGCTCCAGAGACGACTCAGGAAGAGACAAGTGTCCTTCAAACGCTCTGAGAGCTTCCTCAAGAGCATCAGCGCAGGGAAGAAACAAGACAGGAAGTCGACCGCGTCAGAAAACGCACCAAATGAGGCAGGACAGGAAGTGAGCCAGTGTGAGACCAAACAGGAAGATCCTGCTGCTGAGCTCAAAACTGAGGAGAGTCAGATGAAGCCACCTCCTGTGAAGACCGTTGGGCCATTAACggatgatgacatcatcaaactgcGCCCATGTGAGAAGAAGCAGGTAGATTTCAGAGACAAGCTCTACCTGGCTCCATTAACAACGtgtgggaACCTGCCGTTCCGGCGTGTGTGTAAGCGTTTTGGAGCTGATATAACGTGTGGAGAAATGGCTATGTGCACAAACCTGCTGCAGGGTCAGGCGTCTGAGTGGGCTCTGCTCAAGAGACACCACACTGAGGACGTGTTTGGAGtgcagCTGGAAGGATGTTTCCCCGACTCCATGAGCCGCTGTGCTGAGCTCCTCAACCACAACATCGACGTCGACTTCGTGGACATCAACTCTGGCTGTCCTATAGACCTTGTGTACAagaagggaGGTGGATGTGGCCTGATGACCAGAACCAACAAATTTGAGCAGATTGTCAGAGGAATGAACTCCGTTCTGGACGTGCCTTTAACGGTGAAGATCCGTACTGGAGTGCAACAGAGCTGCAACATCGCACACAAACTCATCCCTGAGCTGAAGAAGTGGGGTGTGTCTATGATCAcggtgtgtatacacacacacacacacagatggggAGGTTGTTTAGACGAGGGTTGCCTGGACAGATGCTTGACTAGAAGCGGTCGTTGCTTGAACGGGGATGAAGAAGTGGAAGGTTACCTACACGgtgtcagaggtgCTCTCATTAAGCCATGGCTCTTCACTGAGATTAAGGAGCGGCGACATTGGGACATCTCGTCCTCAGAGCGTCTCCAGATCCTTCAGGATTTCACACACTTTGGATTGGAGCACTGGGGCTCGGACACACAGGGGGTGGAGAAAACACGCAACTTCCTGCTCGAGTGGCTCTCCTTCACCTGCAGGTACATCCCGGTGGGACTGCTGGAGCGTGTACAGAAGATTAATGAACGTCCTCCGTATTATCTGGGTCGTGATTATCTGGAGACTCTGATGGCAAGTCAGCATGTGGATGACTGGATCAGGATCAGTGAGATGTTGCTGGGTCCCGTGCCGAAGAACTTTAGCTTCCTGCCCAAACACAAAGCTAACGCCTATAAGTGAAGTGGAAATACAACGTGACCTAAACTCTGACGCGTAAACACAAAGCTGTTTctgattttaatgattttatggaGTGTATCAGTGATTATCATCTGACTGAAATAAAGctgtataaatttattatgaaaaat

Function

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016491 oxidoreductase activity molecular_function
GO:0043167 ion binding molecular_function

KEGG:

id description
K05544 DUS3; tRNA-dihydrouridine synthase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168071 lncRNA upstream 32582 1509983 ~ 1515675 (+) True G142074
TU168052 lncRNA upstream 65610 1480710 ~ 1482647 (+) True G142062
TU168048 lncRNA upstream 69618 1476980 ~ 1478639 (+) True G142058
TU167851 lncRNA upstream 228698 1313581 ~ 1319559 (+) True G141930
TU167733 lncRNA upstream 330832 1216278 ~ 1217425 (+) False LOC117598140
TU168112 lncRNA downstream 102178 1662088 ~ 1687665 (+) True G142097
TU168031 lncRNA downstream 143352 1703262 ~ 1787697 (+) False G142051
TU168027 lncRNA downstream 143718 1703628 ~ 1795550 (+) False G142051
TU168037 lncRNA downstream 143978 1703888 ~ 1719950 (+) True G142052
TU168020 lncRNA downstream 154652 1714562 ~ 1749952 (+) True G142051
XM_026909950.2 mRNA upstream 7790 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA upstream 7790 1538159 ~ 1540467 (+) True LOC113523893
XM_026909931.2 mRNA upstream 43253 1496473 ~ 1505004 (+) False LOC113523877
XM_026909932.2 mRNA upstream 43253 1496521 ~ 1505004 (+) True LOC113523877
XM_026909968.2 mRNA upstream 75177 1462445 ~ 1473080 (+) True LOC113523903
XM_026909918.2 mRNA downstream 30948 1590858 ~ 1597758 (+) True LOC113523867
XM_034307389.1 mRNA downstream 55233 1615143 ~ 1622790 (+) True LOC113523891
XM_034307593.1 mRNA downstream 62856 1622766 ~ 1646549 (+) True ehmt2
XM_034307416.1 mRNA downstream 87814 1647724 ~ 1682793 (+) True slc44a4
XM_034307177.1 mRNA downstream 413622 1973532 ~ 1998149 (+) False LOC113524921
TU167713 other upstream 375913 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 444994 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 466778 1026987 ~ 1081479 (+) True LOC117598117
TU167711 other upstream 486993 1010669 ~ 1061264 (+) False G141825
TU168100 other downstream 51601 1611511 ~ 1613336 (+) True G142093
TU168103 other downstream 55268 1615178 ~ 1620661 (+) False LOC113523891
TU168470 other downstream 555130 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 710140 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 710540 2270450 ~ 2271586 (+) False LOC117597926

Expression Profile