RNA id: TU168100


Basic Information

Item Value
RNA id TU168100
length 739
RNA type TUCP
GC content 0.60
exon number 3
gene id G142093
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1611511 ~ 1613336 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacacacacacacacacacacacacacacactcacacacttacacacacactcacggggtcggtgcacacacacacactcacggggtcggtgcacacacacacacacacacactcacggggtcggtgcacacacacacacacacactcacgggtcggtgcacacacacacacactccacggggtcggtgcacacacacacacacactcacggggTCGGTGCACATGGCGCGGCTGTGTGAGGTGAGCGCCAGCACGGCGAGGGTGTTGAACAGGGTGGCGTTGAGCACGCTGTACGCGGCGTTCCTCACGGGCAGCAGCATGACGAACATCACCACGAAGTCGGCGTACAGCACCAGGAACCAGGTGAGAGCCGCACAGACCACGCCGCACACGTCCCGGATACACCAGCGGCCCGACGGCGCCGCCGACCGCACAGGGGGGGGAACCGCACACTCCTCCGGCCGCACGTACCCCGCCTTCCTCTCAATGTCCCTGCAGCGTGGGGCTGCCACCTCGCCCGACATcctgctgctcacacacacacacacacacacacacacacacacacacactcactcacacgcatacacacacacactcacatacatacactcatatacacacgcgcactcacacactcgcgcCCATACACACTACATCGtcctgcagagacacagagagagagacagagagagagacagagagagagagagagacagaaagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168085 lncRNA upstream 51620 1558890 ~ 1559891 (+) False dus3l
TU168071 lncRNA upstream 95836 1509983 ~ 1515675 (+) True G142074
TU168052 lncRNA upstream 128864 1480710 ~ 1482647 (+) True G142062
TU168048 lncRNA upstream 132872 1476980 ~ 1478639 (+) True G142058
TU167851 lncRNA upstream 291952 1313581 ~ 1319559 (+) True G141930
TU168112 lncRNA downstream 48752 1662088 ~ 1687665 (+) True G142097
TU168031 lncRNA downstream 89926 1703262 ~ 1787697 (+) False G142051
TU168027 lncRNA downstream 90292 1703628 ~ 1795550 (+) False G142051
TU168037 lncRNA downstream 90552 1703888 ~ 1719950 (+) True G142052
TU168020 lncRNA downstream 101226 1714562 ~ 1749952 (+) True G142051
XM_026909918.2 mRNA upstream 13753 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 51601 1548257 ~ 1559910 (+) True dus3l
XM_026909950.2 mRNA upstream 71044 1534867 ~ 1540467 (+) False LOC113523893
XM_034307151.1 mRNA upstream 71044 1538159 ~ 1540467 (+) True LOC113523893
XM_026909931.2 mRNA upstream 106507 1496473 ~ 1505004 (+) False LOC113523877
XM_034307389.1 mRNA downstream 1807 1615143 ~ 1622790 (+) True LOC113523891
XM_034307593.1 mRNA downstream 9430 1622766 ~ 1646549 (+) True ehmt2
XM_034307416.1 mRNA downstream 34388 1647724 ~ 1682793 (+) True slc44a4
XM_034307177.1 mRNA downstream 360196 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA downstream 360196 1973532 ~ 1998149 (+) False LOC113524921
TU167713 other upstream 439167 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 508248 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 530032 1026987 ~ 1081479 (+) True LOC117598117
TU167711 other upstream 550247 1010669 ~ 1061264 (+) False G141825
LOC117598132 other upstream 585520 1025124 ~ 1025991 (+) True LOC117598132
TU168103 other downstream 1842 1615178 ~ 1620661 (+) False LOC113523891
TU168470 other downstream 501704 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 656714 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 657114 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 665743 2279079 ~ 2279887 (+) False LOC117598179

Expression Profile