RNA id: TU168112


Basic Information

Item Value
RNA id TU168112
length 2387
lncRNA type sense_over
GC content 0.44
exon number 3
gene id G142097
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1662088 ~ 1687665 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcacacacacacacacacacacgtcacGGTGTGAAACTCACACTCATACTGTAGAATTCTGTTAGGTTGCTTAACAGAGCTTGAAAAAGACTAAACACCAATTTCACACAATTTAGGCTCCGCCCCCTCACACAGACTGACATCCTGTTAGTGTAACTACTAACGTCGGCCATTTTAAGTCTCCGCCCCAAATGCTAACACCCGAGAGTTCTTGATAGTgattatttaatgtgtgtgtgtgcacaacgTTAGCTGTTAGATTAAACATGTTTAGCATTCTATAAGGGTTtatccgagtgtgtgtgtgtgtttatgtacagTGCTAATCTTATCTTATACGTTAACTGCTAACTATCCTGTTAAAGAACCAGGCTATAACAGCGCAAACTTACCCTACGTTCACATTAACGAGCCACGAGGCGGCAGGCGAGCGTTCGTTTTCTACGTACGTGCCGCCACAGAGCCCCCGGACCCGAGATTTCCTTAACTCCGGGTCTTTAACGCTGCGCTTACGAACACTATTAGAAATGATTGGCAGCTGACGTAACACTTTTCTGTGGTTGCCCTGGTTACCGTTTAGCATCACTGCACATCTTGGTAGTTCATTCACGCTCAAAGTAGACGGCTACTTTCAACCTCGGCATCAGGAAGTGACACAATCACTAGCGATGTTAGGGGGCCAGCGACCGGAAACTGGACAATGTTTAACGTTATACAAACGATTAAGTAATAGTGgtacatttctcattttttcactCGGTTTCTATCAGATACTTGTCGCGATTCCTGAACCAATCAGTAAGACCCTTGGTTTATTCGACACGCCTCATTTATACACAAGCCACTCCCTCCAGAATTTGTATTTCTGTATACATTTGGTAGCTAACTATCATCTCTGCGGCCATATCGTACTAGCCTGGTGCAACGtgtgaaaccatggcaacctgcataaattaaattaaagatagACACGCCTTCTAATGACGTGCCGCCGGCATGAACTGCTGTTACCTTTCTGTATCTTAGAGATCCAAGAAATTCGGCGAATAAGATGAACTCAGCcctcacttgtgtgtgtgtttcacttgcCTCGATCTCTTCTCAGCCTAGGAAGCCTTGTGATTGGTCATGTAAGACAGCCaatgaaaatgagagaaaacgAGAAATCCGAAACTAGCCACGGTATAACGGTTCTCCAAAAAGTTACAGAGAAGGATTTACGGTTCATTGCACTCAGGCAGAAGAATAACCTGCGATGTTCTAGCGTAACGTTTACTCGCTAACTGGATTCACTTAGTAACGAATTTCTGCCTCAACAGTGTTTCTGATGTTACGCTATAAACACAAGGAAGGAGACGTCAATGCAAGAAGGATTTCCAGTTGGAACGACGTAAAGCTCTGTCATCACCGATCATCCTGCGTGAACTTAGCGTTTGTGATGCtagttttgctatttttttttaagttacagTAGCAccttacagatttaacaagcttCTAACAAGATTCTCCTGGTAACCAGGTAGCGTTGGGAGGCGTGGCTTACCCATGATGCCATAGGAGAGTGTAATCCACCTAATGCTGATGCGGCCATGTTAATCCCTCGTTGTCATAGATACTGGCTAACGTCCACGTGACGTGGTTTCCCTATAACGTACAagatacccataatgcactgtagCAGTAACGTGTATGGCGGTGATCCTGATGCGTCAGGCTCCTTTGCGGTGGAAAAGCGTGGAACGGATGCGTGGATTAGACACTCGAGAACCAAAAGGgataaataatactttttacaTACACTAATGCGCTAAACGACGTTAGCTCAACACGCGTGTAAGGTGTGTGAAGAGGAATTCTCTTTGGTATGAAGCAGAAGTCATGAAACAGTGGGATAATGATGtacaagtgtgtgcgtgtgtgtgtgtgtgtgtgttatttttcacacactcgctttattaattttttatggaACATCATTAAACTCCAGCTGTGTTTTAATACTGTTTCTCTGTACTGGACaatctgtggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcggtcctgacatcatctctctctctctctcccagtatctctctctctctctctctcgttctctctcacacacattcacacactcagcatccagaagaagaagaagatggcgAGGAAGAGGAAGAGCGAGTCCTGCCAGTTGTTGCCGTTGTTACCATTCCCGTTGCCTTGGTGATCTGCGGCATAGTGAGGAtctgaaaattattatttacataaagaaaaaaaaaagtgagatttTGAGATTTCAGAAGTGACATAACGACATTAATGACCCAATACATATCATAAGAGCTCTGTGTAAACGTAGATGTAGGAGAcgttaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168085 lncRNA upstream 102197 1558890 ~ 1559891 (+) False dus3l
TU168071 lncRNA upstream 146413 1509983 ~ 1515675 (+) True G142074
TU168052 lncRNA upstream 179441 1480710 ~ 1482647 (+) True G142062
TU168048 lncRNA upstream 183449 1476980 ~ 1478639 (+) True G142058
TU167851 lncRNA upstream 342529 1313581 ~ 1319559 (+) True G141930
TU168031 lncRNA downstream 15597 1703262 ~ 1787697 (+) False G142051
TU168027 lncRNA downstream 15963 1703628 ~ 1795550 (+) False G142051
TU168037 lncRNA downstream 16223 1703888 ~ 1719950 (+) True G142052
TU168020 lncRNA downstream 26897 1714562 ~ 1749952 (+) True G142051
TU168022 lncRNA downstream 26897 1714562 ~ 1775211 (+) False G142051
XM_034307593.1 mRNA upstream 15539 1622766 ~ 1646549 (+) True ehmt2
XM_034307389.1 mRNA upstream 39298 1615143 ~ 1622790 (+) True LOC113523891
XM_026909918.2 mRNA upstream 64330 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 102178 1548257 ~ 1559910 (+) True dus3l
XM_026909950.2 mRNA upstream 121621 1534867 ~ 1540467 (+) False LOC113523893
XM_034307177.1 mRNA downstream 285867 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA downstream 285867 1973532 ~ 1998149 (+) False LOC113524921
XM_034307178.1 mRNA downstream 285867 1973532 ~ 1998149 (+) False LOC113524921
XM_034307180.1 mRNA downstream 285867 1973532 ~ 1998149 (+) False LOC113524921
XM_026911309.2 mRNA downstream 285867 1973532 ~ 1978462 (+) True LOC113524921
TU168103 other upstream 41427 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 48752 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 489744 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 558825 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 580609 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 427375 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 582385 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 582785 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 591414 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 600433 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile