RNA id: TU168162


Basic Information

Item Value
RNA id TU168162
length 352
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G142134
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1869549 ~ 1870509 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gtgtgtgtgtgtgtgtgtgtacctggtggttagtgtgtgttgtacaggCTGTAGAGGTTGtcgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctggtggttagtgtgtgtgttgtacaggcCGTTGAGATTAGCCTCGTGGCAGTTCTTGTACCACCAGCCCCCTCTGTAAGACATGGAGCAGCGTGTGATGAAGGGCTGGGGGTCGCGGTCGAACGTGGAGAACGGCCGCTTATCGTGGTACTTCAGAGAGTCGCCTGTAAAACCACGTCATCATAACGACACGTTACACTCAGTGACACGTTacttacacacacctttatcAGACACACCACAAACTAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168150 lncRNA upstream 13199 1851472 ~ 1856350 (+) True G142122
TU168042 lncRNA upstream 37064 1819530 ~ 1832485 (+) True G142054
TU168046 lncRNA upstream 49769 1784404 ~ 1819780 (+) True G142056
TU168186 lncRNA downstream 32654 1903163 ~ 1904434 (+) True G142157
TU168193 lncRNA downstream 77372 1947881 ~ 1950347 (+) True G142164
XR_004578671.1 lncRNA downstream 128747 1999256 ~ 2003137 (+) True LOC117597929
XR_004578878.1 lncRNA downstream 148300 2018809 ~ 2022140 (+) True LOC117598183
TU168463 lncRNA downstream 181949 2052458 ~ 2052691 (+) True G142301
XM_034307416.1 mRNA upstream 186756 1647724 ~ 1682793 (+) True slc44a4
XM_034307593.1 mRNA upstream 223000 1622766 ~ 1646549 (+) True ehmt2
XM_034307389.1 mRNA upstream 246759 1615143 ~ 1622790 (+) True LOC113523891
XM_026909918.2 mRNA upstream 271791 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 309639 1548257 ~ 1559910 (+) True dus3l
XM_034307177.1 mRNA downstream 103023 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA downstream 103023 1973532 ~ 1998149 (+) False LOC113524921
XM_034307178.1 mRNA downstream 103023 1973532 ~ 1998149 (+) False LOC113524921
XM_034307180.1 mRNA downstream 103023 1973532 ~ 1998149 (+) False LOC113524921
XM_026911309.2 mRNA downstream 103023 1973532 ~ 1978462 (+) True LOC113524921
TU168103 other upstream 248888 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 256213 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 697205 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 766286 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 788070 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 244531 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 399541 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 399941 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 408570 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 417589 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile