RNA id: TU168186


Basic Information

Item Value
RNA id TU168186
length 808
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G142157
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 1903163 ~ 1904434 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGCGCAGTCAGGTCCTGTAAATCCATCCTTACACTCCCTGCAATCCGGCTCAGCAAAACtgggattacacacacacttgccgTTTACACATCTTCCTCTGTTGCTGCAGTTATTTGGGCAGGTCTTGGTGGAACAGTCTGGTCCGGTGAAgccaacatcacacacacattgtccatTTACACATCTGCCTTTGTTGCTGCAGTTATTGGGGCAGGACCGTTCCGAACAATCTGGACCTGTGAATccagtatcacacacacacttcccattCACACACCTGCCTTTGTTGTTGCAATTTCCAGGGCAGGACCGTTCAGAACAATCTGGACCTGTGAATCCAGtattgcacacacatttcccaTTAACACACTTGCCTTTGTTGTTGCAATTTCCAGGGCAGGACCTTTCAGAGCAATCCAGACCTGTGAATCcggtgtcacacacacacttcccattCACACACCTTCCTTTGTTGTTGCAATTTCCAGGACACTGTACAGTTGAGCAGTCTGGACCTGTGAATCCTGCATTGCACACACATCTTCCGTTCACACACCTGCCATTGCTGCTGCAATTTTTGGGGCATGTTTTAACAGAGCAGTCTGGGCCTGTGAAGCCGGGATCACAAACACACTTGCCATTTACACACTTCCCCTTGTTGCTGCAGTCTCTGGGGCAGTTGAGCACACTGCAGTCAGGTCCACTAAATccagggaaacacacacacttcccatcCACGCAGCGGCCCTGGTCACTGCAGTCATTCAAACACTCATCTGTTGGGGGAGGGACAGTGGTGCAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168162 lncRNA upstream 32654 1869549 ~ 1870509 (+) True G142134
TU168150 lncRNA upstream 46813 1851472 ~ 1856350 (+) True G142122
TU168042 lncRNA upstream 70678 1819530 ~ 1832485 (+) True G142054
TU168041 lncRNA upstream 107253 1788168 ~ 1795910 (+) False G142053
TU168140 lncRNA upstream 114727 1784777 ~ 1788436 (+) True G142113
TU168193 lncRNA downstream 43447 1947881 ~ 1950347 (+) True G142164
XR_004578671.1 lncRNA downstream 94822 1999256 ~ 2003137 (+) True LOC117597929
XR_004578878.1 lncRNA downstream 114375 2018809 ~ 2022140 (+) True LOC117598183
TU168463 lncRNA downstream 148024 2052458 ~ 2052691 (+) True G142301
TU168464 lncRNA downstream 150565 2054999 ~ 2103929 (+) True G142302
XM_034307416.1 mRNA upstream 220370 1647724 ~ 1682793 (+) True slc44a4
XM_034307593.1 mRNA upstream 256614 1622766 ~ 1646549 (+) True ehmt2
XM_034307389.1 mRNA upstream 280373 1615143 ~ 1622790 (+) True LOC113523891
XM_026909918.2 mRNA upstream 305405 1590858 ~ 1597758 (+) True LOC113523867
XM_034307388.1 mRNA upstream 343253 1548257 ~ 1559910 (+) True dus3l
XM_034307177.1 mRNA downstream 69098 1973532 ~ 1998149 (+) False LOC113524921
XM_034307179.1 mRNA downstream 69098 1973532 ~ 1998149 (+) False LOC113524921
XM_034307178.1 mRNA downstream 69098 1973532 ~ 1998149 (+) False LOC113524921
XM_034307180.1 mRNA downstream 69098 1973532 ~ 1998149 (+) False LOC113524921
XM_026911309.2 mRNA downstream 69098 1973532 ~ 1978462 (+) True LOC113524921
TU168103 other upstream 282502 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 289827 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 730819 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 799900 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 821684 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 210606 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 365616 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 366016 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 374645 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 383664 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile