RNA id: XM_034307497.1


Basic Information

Item Value
RNA id XM_034307497.1
length 2278
RNA type mRNA
GC content 0.44
exon number 20
gene id LOC113545687
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2069238 ~ 2183053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CACATCAGTTTCCTAAAGGCAGTTGATGATGTGGCGTCTCTCTGTAACCTGTCTCctgctctgtgtctctgtaCACACGGCTCACAGTGCCATTTACAATCAGGGAGGCACAGAGGGGAGTAACAGTGTTCTCTTCTGTGAGAATGATGGTAACGTGATTTGGGGTAAAGGTGTTGATGGAGGGAGAGGGGACATCCTCACTGCTCAACATGGAGAAGAACCCATTAAACACAACCCTGATCCAGATCACAGATACAATGTGACAAGTGAATTATCACTCCAGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACTCTGTTCCTGTAGTCAATCTGACTGTCACTCCATTAAAAGCCAGAGTCAATCAGAGAGGCACAGAGGGGAGTGACACTTTTCTCTTCTGTGAGAATGATGGTAAAGTGATTTGGAGTAAAAGTCTTGATGGAGGGAGAGGGGAAATCCTCACTGCTCAACATGGAGAAGAACCCATTAAACACAACCCTGATCCAGATCACAGATACACTGTGTTAGATGATTTATCACTCCAGATAAaggatctgtctctctcagactcGGGGATTTACTACTGTAACTCTGTTCCTGTAGTCAATCTGACTGTCACTCCATTAAAAGACTCCTCCACTAAATCCTACACAACTGCATCTACCATGAACAACACGGACAGCGTCAGTGAGGAGAACGAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCAGAGTGACTCACACTGAAAATGGAGCTTCTCAAAACAACATTCCCAAGAGCAGTACAGAAGATATCTGGACTACAAGTTCCTCCACTAAATCCTACACAACTGCATCTACCATGAACAACACGGACAGCATCAGTGAGGAGAACGAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCAGAGTGACTCACACTGAAAATGGAGCTTCTCAAAAGAACATTCCCAAGAGCAGTACAGAAGATATCTGGACTACAAGTTCCTCCACTAAATCCTACACAACTACATCTACAATGAACAACATGGACAGCATCAGTGAGGAGAACGAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCGGAGTGACTCACACTGAAAATGGAGCTTCTCAAAGCAACATTCCCAAGAGCAGTACAGAAGATATCTGGACTACAAATTCCTCCACTAAATCCTCCACAACTGCATCTACCATGAACAACACGGACAGCATCAGTGAGGAGAACGAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCGGAGTGACTCACACTGAAAATGGAGCTTCTCAAAAGAACATTCCCAAGAGCAGTACAGAAGATATCTGGACTACAAATTCCTCCACTACATCCTCCACAACTACATCTACCATGAACAACACGGATTCTTCAACTACATCCTCCACAACTACATCTACCATGAACAACACGGACAGCATCAGTGAGGAGAACAAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCGGAGTGACTCACACTGAAAATGGAGCTTCTCAAAAGAACATTCCCAAGAGCAGTACAGAAGATATCAGGACTACAAGTTCCTCCACTAAATCCTCCACAACTGCATCTACCATGAACAACACGGGCATCATGATTATTGTCTCTGTGCTGATTGGAGTCACTGTTGTAGTAGTTTTTGTAGCTCTGCTGCTGTGGAGACGTTTCTTCCGAAAGAAAACTGCTAAAGTCAGAAAGCCAGATCATGTCTATGAATCCATAGGAGATGTTCCACTGGAAGCACAGGGAAATCAATATGAAGCCATTTACGTCCTGGCAGGTGACCCAGCTATAGTCAATAAGGGgaaaaagacacacactgatgctccCTCATGTTCAGAGACACAATCACCTGAAAATCCGGTCGAGTCGGTGTATTCCACAATACAGAAACGGCACGCTTAAATCTCTCACATCTCAGAGTATTCACATTAACTATACATCCACTGTTTGTCTTTAAAGTACTATGGGACAAAGTTAATCATTTATCCATTGTTGCCTCGGCCAGGAGGTTATGACTTGACTGTAGACAGATCTTTCAATAAGATCActggattcattcattcatacttcattatttgatttaattttcattttgtagcataatgtacattttctaatttctatatttttatatattgtatatatagtCAATGACAGACACTGACAGAGTTTTCatgattttgcttttatacaccaccacaatgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168464 lncRNA upstream 11111 2054999 ~ 2103929 (+) True G142302
TU168465 lncRNA upstream 31573 2055952 ~ 2083467 (+) False LOC113524920
TU168463 lncRNA upstream 62349 2052458 ~ 2052691 (+) True G142301
XR_004578878.1 lncRNA upstream 92900 2018809 ~ 2022140 (+) True LOC117598183
XR_004578671.1 lncRNA upstream 111903 1999256 ~ 2003137 (+) True LOC117597929
XR_004578679.1 lncRNA downstream 37514 2220567 ~ 2226796 (+) True LOC113545551
TU168530 lncRNA downstream 37623 2220676 ~ 2226779 (+) False LOC113545551
TU168532 lncRNA downstream 37623 2220676 ~ 2226779 (+) False LOC113545551
XR_004578870.1 lncRNA downstream 96130 2279183 ~ 2279887 (+) True LOC117598179
XR_004578871.1 lncRNA downstream 96423 2279476 ~ 2279887 (+) False LOC117598179
XM_034307391.1 mRNA upstream 29162 2055031 ~ 2085878 (+) True LOC113524920
XM_034307576.1 mRNA upstream 61776 2036875 ~ 2053264 (+) False LOC113524923
XM_034307525.1 mRNA downstream 1670 2184723 ~ 2195601 (+) True LOC113545587
XM_026945107.2 mRNA downstream 23870 2206923 ~ 2217442 (+) False lgals17
XM_026945109.2 mRNA downstream 23880 2206933 ~ 2217442 (+) True lgals17
XM_026945108.2 mRNA downstream 23880 2206933 ~ 2217442 (+) False lgals17
XM_034307655.1 mRNA downstream 43868 2226921 ~ 2239299 (+) True LOC113545586
TU168103 other upstream 494379 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 501704 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 942696 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 1011777 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 1033561 1026987 ~ 1081479 (+) True LOC117598117
XR_004578666.1 other downstream 86997 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 87397 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 96026 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 105045 2288098 ~ 2288639 (+) False LOC117598174
XR_004578865.1 other downstream 113240 2296293 ~ 2297706 (+) True LOC117598173

Expression Profile