RNA id: TU168464


Basic Information

Item Value
RNA id TU168464
length 212
lncRNA type read_through
GC content 0.50
exon number 2
gene id G142302
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2054999 ~ 2103929 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCGCACATCAGTTTCCTAAAGGCAGTTGATGATGTGGGGTCTCTCTGTAACCTGTCTCctgctctgtgtctctgtaCACACGGCTCACAGTGACAGCGTCAGTGAGGAGAACGAGTCCACACAGACGACTCCGACTAGAAGAACCAGCACCAGAGTGACTCACACTGAAAATGGAGCTTCTCAAAACAACATTCCCAAGAGCAGTACAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168463 lncRNA upstream 2308 2052458 ~ 2052691 (+) True G142301
XR_004578878.1 lncRNA upstream 32859 2018809 ~ 2022140 (+) True LOC117598183
XR_004578671.1 lncRNA upstream 51862 1999256 ~ 2003137 (+) True LOC117597929
TU168193 lncRNA upstream 104652 1947881 ~ 1950347 (+) True G142164
TU168186 lncRNA upstream 150565 1903163 ~ 1904434 (+) True G142157
XR_004578679.1 lncRNA downstream 116638 2220567 ~ 2226796 (+) True LOC113545551
TU168530 lncRNA downstream 116747 2220676 ~ 2226779 (+) False LOC113545551
TU168532 lncRNA downstream 116747 2220676 ~ 2226779 (+) False LOC113545551
XR_004578870.1 lncRNA downstream 175254 2279183 ~ 2279887 (+) True LOC117598179
XR_004578871.1 lncRNA downstream 175547 2279476 ~ 2279887 (+) False LOC117598179
XM_034307576.1 mRNA upstream 1735 2036875 ~ 2053264 (+) False LOC113524923
XM_034307578.1 mRNA upstream 1735 2036875 ~ 2053264 (+) False LOC113524923
XM_034307577.1 mRNA upstream 1735 2036875 ~ 2053264 (+) False LOC113524923
XM_026911314.2 mRNA upstream 6984 2036875 ~ 2048015 (+) True LOC113524923
XM_034307705.1 mRNA upstream 21350 2024780 ~ 2033649 (+) True LOC113524922
XM_034307490.1 mRNA downstream 11111 2115040 ~ 2183053 (+) True LOC113545687
XM_034307492.1 mRNA downstream 11111 2115040 ~ 2183053 (+) False LOC113545687
XM_034307498.1 mRNA downstream 11111 2115040 ~ 2183053 (+) False LOC113545687
XM_034307494.1 mRNA downstream 11111 2115040 ~ 2183053 (+) False LOC113545687
XM_034307497.1 mRNA downstream 11111 2115040 ~ 2183053 (+) False LOC113545687
TU168103 other upstream 434338 1615178 ~ 1620661 (+) False LOC113523891
TU168100 other upstream 441663 1611511 ~ 1613336 (+) True G142093
TU167713 other upstream 882655 1129476 ~ 1172344 (+) True G141825
LOC117598126 other upstream 951736 1102632 ~ 1103263 (+) True LOC117598126
LOC117598117 other upstream 973520 1026987 ~ 1081479 (+) True LOC117598117
TU168470 other downstream 11111 2115040 ~ 2115992 (+) False LOC113545687
XR_004578666.1 other downstream 166121 2270050 ~ 2271586 (+) True LOC117597926
XR_004578667.1 other downstream 166521 2270450 ~ 2271586 (+) False LOC117597926
XR_004578872.1 other downstream 175150 2279079 ~ 2279887 (+) False LOC117598179
XR_004578868.1 other downstream 184169 2288098 ~ 2288639 (+) False LOC117598174

Expression Profile