RNA id: TU168612


Basic Information

Item Value
RNA id TU168612
length 2514
lncRNA type read_through
GC content 0.37
exon number 4
gene id LOC113523823
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2431145 ~ 3032526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTGAGTTTATTACTagttgattttttatttttaaaagcagtttaaTATTTCTATACAGTATCTATACAGCACTGTCAGAGaccaccattttgttttcaatcaaATCGCCAATATCACTTGGTACTTATTTATGCAGGACAAtagtaaagtaataataaaatatatatgtatataataactttacaaataaaatttttacagatttcataTTTCTTCTGTTGAAGAcctttgtgtgatttatgaacAATAAGAATAATGAACAGCAATCAGGGGAAAATgcatttaacagaaaatcacacaggtcttcaacagtaaaaacagtGCATTTCCACAGAGTTCCCTGAAAACATGCAGGTgtgtggactggctactctaaactgccccttggtgtgaatgaggATGTGAATGTGCTTCTATGAGGCTTTGTGAGGGACTGACATTCAGTTTAGGGTGTTTTCCTGCCTTGTGCTCTGTTTTCCTGGGaaagactctggatccactgcgaccctgaccaggaaaaaatgttcactgaagatgatgatgaatttAAAAGAGTCTAACAGTGATATTAGTGATGTAATTTAAGTTATGTACTTTAAGTGATGTACTTGATTCATGGAAATATAAAGTCAGTATACATTCTCTTTTGAAGTAAGAGTATAAAAGAAGGAGTGTAAAGCTGGTGTGAGTAACATCCctgttgatattttaaaaatatggtcACATGCTGATTAAGCTCGCACATTATTCCTTGTTCAGCAAAGTGCCTTTATTAGCAAAAGTGATTATATACAGCATCAGTAACAATAACACTTACAGTCATGGATATCACTTGTCATTGCAGTTTAACAGCAAACCCTGAGAATAATACTTCAACTGTGATGTAGGAAAACTTCTAACAGGTTAGCTTGTGTAATGAAGTTAATGAAATTAAGCGTCTATGTAGCTGTCGGACAGCACTGCCAAAAGCAATATCATCAAACCATCTGCAACAAAAATGTAACTTGTGTCACTACACCTTATTAAGCAGTACAGAAGATAGATTCAATATACATTCTTTTATCTTCGAGTTATGTTTAAAACTGGtctaaatatatttgttttaaactcaTTGTTGTGCAGCTATGTAAAGAGCAGGAAGCTATTTGGGATTTGGCCTTAGCTATGTACACTTTTTCCATGTCTGAAATGGCATCCTACTGTTCCCACAGGTCACAATAAACAAGTCACATTAGAGCTGTGCATCATGACTGGGCTCCAGTGGCATCCAGCAAAAAACTCACAAGCATCAAATGTTTTTACATCTGCTGTAACttcttaatatttatggaaggaatctccagtcaGAGTTgtaagtcagaggtaaaactaaTGCCACATAATGGCTCCACATCAGCATTTCAGGATGAGAGCGACTGGGTTATGTGCGGGGCCCAGTCACCAGACGCTTGCCTGTGGCCTGGATCCAGGGCTGGGTTCCTGTAACCCTAAAGTGGACAGGGtacatttcttttctgtctttcctgtACCTTTTATGGGGGTCATTAGGATTGATCTTTGTCTGACCCTCCCTATATGCTTTGGCTCTGACCTTCTGAAAggtaacacacagactgacaggAGGTTGTGTGTTCAAGCAGGCGAacagaacaacacaaaaacATAACACTTCCACCACGTGGTGCTGGAGGCATAAAGACACAGTCCTGTGCACCACTAATTCACACTCAGGTTTATGCAAAGAAGAACTGGAGGAGTAAACATGATATGAGGGACAAGACCATGATCAGTGGGTGAGGACACTTCATTCCTGCATCAtctggagaaaaacagaaattaattattttatctagTTTAGCTAGAACATTTTCCACATAAAGTCTAAGCAGTGAGGTTTACAACCAAAATCAAacaatatacatgtatatatacagaggcgggtgacaaattaaaggaaaaactggtaACTCTGGTGTTATTATTTTGCTGGTATGGTTTGTGTCCACTCGCCCTTCACAGAGAAACATCACTGCAACTCAATACTAATTTAAAGTCAGAATCACAtgtggctgtgatggtcaggtgtccacatacgtttggccatgtagtgtataattAACTAAGGTCAAAAATTTCATgggcaattaaaaacaaaaaacacaaaaaaatgaagtagaCAGAAAAAAGCCCAGTGCACTTAACATCCTGAAATAAATGGAGTTATTGGTTGTATAAGAAATTAAATCTGCTTTGCAGGTAATGAAACACACAAGTGTATCTCACCTGTGGGAATTTCAGTTCTCTTTTCAGGAGGTTTTtctgtaatggaaaaaaaacattattctaTCATCTTGGTACATTCATAGCTCTTTTGTGTGTACTCTCCTCAATGATGCTAAAGTGATTTACTCTGTAACTGTAGATCAGGAACACGTGTAGGTCAGGCTCACTGCTAACgtagctcagtgtttacatTCACAATCTTTGACTCCAGTACTGTTTTAACACACGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578831.1 lncRNA upstream 1230 2419974 ~ 2429915 (+) True LOC117598110
XR_004578832.1 lncRNA upstream 1230 2419974 ~ 2429915 (+) False LOC117598110
TU168637 lncRNA upstream 34894 2391344 ~ 2396251 (+) True G142420
TU168646 lncRNA upstream 58790 2372124 ~ 2372355 (+) True G142429
TU168606 lncRNA upstream 71688 2358799 ~ 2359457 (+) True G142411
XR_004578790.1 lncRNA downstream 4145 2823915 ~ 2832344 (+) False LOC117598069
XR_004578791.1 lncRNA downstream 4854 2824624 ~ 2832344 (+) False LOC117598069
TU168702 lncRNA downstream 37160 2856930 ~ 2993966 (+) True G142469
TU168715 lncRNA downstream 131297 2951067 ~ 2993474 (+) False G142478
TU168716 lncRNA downstream 131297 2951067 ~ 2993474 (+) True G142478
XM_034307638.1 mRNA upstream 24313 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 24313 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 47352 2374715 ~ 2383793 (+) True LOC117598106
XM_034307643.1 mRNA upstream 54234 2374699 ~ 2376911 (+) False LOC117598106
XM_034307527.1 mRNA upstream 73152 2353535 ~ 2357993 (+) False LOC117595676
XM_034307448.1 mRNA downstream 73717 2893487 ~ 2898257 (+) True LOC117598055
XM_034307445.1 mRNA downstream 194312 3014082 ~ 3032526 (+) False LOC113523823
XM_034307446.1 mRNA downstream 206534 3026304 ~ 3032526 (+) False LOC113523823
XM_026909910.2 mRNA downstream 235853 3055623 ~ 3061337 (+) True LOC113523850
XM_026909916.2 mRNA downstream 298518 3118288 ~ 3123714 (+) True rps18
TU168604 other upstream 74913 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 133439 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 133439 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 133439 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 142506 2288098 ~ 2288639 (+) False LOC117598174
LOC113523831 other downstream 372170 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 378106 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 396207 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 397648 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 399379 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile