RNA id: XM_034307445.1


Basic Information

Item Value
RNA id XM_034307445.1
length 2077
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC113523823
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2431145 ~ 3032526 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gttcgTTGTGACGTCATGACGTCGTTTCTCTTGGGGGAGGGGGGTTACCCTACAGCTGGGGGAGTTAGCATCAATGCTAAAAAGTGTAAAGTCATTGTAAAGACTGTTGTCGCTCTGTCATCGACTGAGAAAATTTCCACACACTCCTCCAGACAGTATCAGGGCATCATGACCTCCGTTTTTTCCATTTGCATCGTATTGGGTTCCATGTGTGTGAGCCTCCTCTCTGCAGAAGCTGAGATCACTGTATCTGGCCAAGTGGGGTCTACACCTGTCCTGCCGTGTAAACTGCAGAGTGTAGGCACTGAAACACCGCATATTAGGTGGTCCATCAAATCTGAGATTGTGTTTGAGCATGTTTTGGGTAAGGAGAGCTATCAGGGTGAGGGATATGAGGGCCGTGTGGACGTCCCTGAGGAAGAGCTGCGTAAGGGGAACTGTTCCTTGGTGTTGCGCAATCTGTCACTTACTGATGAAGGTGTCTACACGAGCTACCAGATAGTGAGACGCTCCAAGAGATCTATCATGACAAAAAGAGAAGATATCAGCCGTGTTAAACTCTCAGTCCAGGAAAAACCTCCTGAAAAGAGAACTGAAATTCCCACAGATGATGCAGGAATGAAGTGTCCTCACCCACCGATCATGGTCTTGTCCCTCATATCATGTTTACTCCTCCAGTTCTTCTTTGCGTAAACCTGAGTGTGAATTAGAGCTGTGCACAGGACTGTGTCTTTATGCCTCCAGCACCACGTGGTGGAagtgttatgtttttgtgttgttctgtTCGCCTGCTTGAATACACAACCTcctgtcagtctgtgtgttatCTTTCAGAAGGTCAGAGCCCAAGCATATAGGGAGGGTCAGACAAAGATCAATCCTAATGACCCCCATAAAAGgtacaggaaagagagaaaagaaatgtacCCTGTCCACTTTAGGGTTATGGGAACCCAGCCCTGGAGCCAGGCCACAGGCAAGCGTCTGGTGACTGGGCCCCCCACATAACCCAGTCGCTCTCATCCTGAAATGCTGATGTGGAGCCATTTTGTGGGCTTAAGACCTTCAGAATGAAAGGTGGGAGTcagtcagaaaacttaaagttagttttacctctgacttacAACTCtgactggagattccttccataaatatcaaGAAATTGTCCCTACATAAACAacagattaatataaaatggtgatttgcagctgaacttctgtcagagctgctgttacagagcattttatatcatcaattagaatccagaattcaacagtataaaagattaaaatagcaAGACACAGCAAAAAAACTAACATCAGCTGTTTTTAAGTAGTTAACTagttaacataaataaaatgaaaactagTTTATAACCCTCACTGTAGACAAACCTGCATTTAGAAAGTGTTAGCCAgtagaaaaaatagaaaacaggGTGAGCTATGATCTCTTCCTGGAGAAATAACAGAAGAAGTGATTATTGGGAAGTGAACCTCATTTCTGGCcaatgtgtaaaaacatttgATGCTTGTGAGTTTTTTGCTGGATGCCACTGGATCCCAGTCGTGATGCACAGCTCTAATGTGACTTGTTTATTGTGACCTGTGGGAACAGTAGGATGCCATTTCAGACATGGAAAAAGTGTACATAGCTAAGGCCAAATCCCAAATAGCTTCCTACTCTTTACATAGCTGCACAACAATGAgttgtacacaaacacaaatttttTTGGACCAGTTTTAAACATAACTGGAAGATATAAGAACGTATATTGAATCTATCTTCTGTACTGCTTAATAAGGTGTAGTGACACAAGTTACATTTTTGTTGCAGATGGTTTGATGATATTGCTTTTGGCAGTGCTGTCCGACAGCTACATAGGCAGCTTAATTTCATTAGCTTCATTACACAAGCTAACCTGTTAGAAGTTTTCCTACATCACAGTTGAAGTATTATTCTCAGGGTTTGCTGTTAAACTGCAATGACAAGTGATATCCATGACTGTAAAGTGTTATTGTTACTGATGCTGTATATAATCACTTTTGCTAATAAAGGCACTTTGCTGAACAAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168671 lncRNA upstream 5390 2579614 ~ 3008692 (+) True G142446
TU168702 lncRNA upstream 20116 2856930 ~ 2993966 (+) True G142469
TU168704 lncRNA upstream 20116 2952074 ~ 2993966 (+) False G142469
TU168715 lncRNA upstream 20608 2951067 ~ 2993474 (+) False G142478
TU168716 lncRNA upstream 20608 2951067 ~ 2993474 (+) True G142478
TU168740 lncRNA downstream 70893 3103419 ~ 3104643 (+) True G142502
TU168741 lncRNA downstream 71546 3104072 ~ 3104643 (+) False G142502
TU168743 lncRNA downstream 76991 3109517 ~ 3110320 (+) True G142504
TU168772 lncRNA downstream 126920 3159446 ~ 3193362 (+) False G142521
TU168773 lncRNA downstream 126920 3159446 ~ 3176981 (+) False G142521
XM_034307448.1 mRNA upstream 115825 2893487 ~ 2898257 (+) True LOC117598055
XM_034307452.1 mRNA upstream 257815 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA upstream 257815 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA upstream 257815 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA upstream 257815 2753429 ~ 2756267 (+) False LOC117598059
XM_026909910.2 mRNA downstream 23097 3055623 ~ 3061337 (+) True LOC113523850
XM_026909916.2 mRNA downstream 85762 3118288 ~ 3123714 (+) True rps18
XM_034307287.1 mRNA downstream 113512 3146038 ~ 3153846 (+) True slc39a7
XM_026909884.2 mRNA downstream 261273 3293799 ~ 3308324 (+) True cratb
XM_034307426.1 mRNA downstream 314046 3346572 ~ 3356643 (+) True ppt2b
TU168667 other upstream 205445 2559811 ~ 2808637 (+) True LOC117598067
TU168662 other upstream 536124 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 657850 2339449 ~ 2356232 (+) False LOC117595676
XR_004578867.1 other upstream 716376 2296633 ~ 2297706 (+) False LOC117598173
LOC113523831 other downstream 159414 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 165350 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 183451 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 184892 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 186623 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile