RNA id: XR_004578833.1


Basic Information

Item Value
RNA id XR_004578833.1
length 1259
lncRNA type intronic
GC content 0.41
exon number 5
gene id LOC117598111
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2487186 ~ 2497632 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tttacaccagtatttacataagtacacttgtgaaaactggtagtgaataatgatgaatatgaagaaccttgagaatgtagaatataatgacagctttctaaatgatagcttcCTTGTAGAAGTGTAATGTTATCGTAAGGATTAAGTTGTTTCTCTTCATGAATATAAGCCATCCAAGAAAGAAACTTCAAGATGTAAACCCCTCTCTTAGTTCACAAGCAGGCAAAAGTGTTCTACGGTGTTGGTGTCGATGTCGATGGATGCATTAAACATCTGTGAACGGAACCTCAGCCTTCGCGTTGTGACTAAGGGCGGCATACCCAATACGATGCAAATGGAAAAAAGCAGGTCATGATGCCCTGATACTGTCTGGAAAAGCagAATGAAAGATTCAACAGGTGAACTAATTCCAGTACAGAACCTATAGGATGTTGCGGATGCGCGACTGAACGGATCACTTCCCGAGATGGAATGACCCATCACTACGAAAGACAGAGACAGCGCCAGTGTGTTACAGCGGAGAGTGAGAGGGTGTACAGATTTCTTTCCTGCTGTTCTAAAGAATCACCCACACAGCCAGCTGCCACAGATGATGGAGGAATGAACGCTTCTCCCACTCTGATGATGGTCGTATCCCTCCTCTTATTAGCCAGTCATTTCAGCACAATAACATGACAGGCATACTTTATGTTgattttttccttcattcttcTTATTAGGCAAAATAGTCGGTCAGATTTTGTGAACATTTCAGCTCGAGGTACGAGAGTGTACTGTTACCAGTTGCTGGTGTTTCTTTTACACTGGGTAACGATTTGGCAGGGAGTAAAGTACTTTCCCTTCCTGAAGTGACCCGTTCACTACAAGTGAAGGTGTCCTTACCCAGCAGTATCCCTAGTGTTCCCTACTTGTCTGCTCACCTGTGTTCTTCATGTGAACAGCTTGAACTTGAACTAGGTGTGCGGTTACGCCTGATGGGAAGCTCTGGTACGTTATGTTAGGCGATGACTGTTGACTTCATCTGTCACTGCTCATTACTATATACTAAAATTCTTGCATGTTTGTACATTTCTACCTTTTTACTTCATACTTTGTATGGTGTTACCTCCATGATCGTATTTCTGTCTGTACTTTATTCCTTTGTATGTTGCGGCCAGttcttcggtgcttggccccctaataacaataatacattCTCTTAAAAGATGTTttagtaaatgtatttttatttggattaatGCTTTATAGTGTCTCTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168655 lncRNA upstream 1798 2433614 ~ 2485388 (+) True G142437
TU168635 lncRNA upstream 4677 2430550 ~ 2482509 (+) True G142418
TU168661 lncRNA upstream 9228 2476434 ~ 2477958 (+) False LOC117598104
TU168659 lncRNA upstream 17004 2464284 ~ 2470182 (+) True G142441
TU168653 lncRNA upstream 52839 2417954 ~ 2434347 (+) True G142435
TU168666 lncRNA downstream 43762 2541250 ~ 2555657 (+) True G142443
TU168621 lncRNA downstream 46841 2544329 ~ 2559331 (+) False LOC113523823
TU168665 lncRNA downstream 52361 2549849 ~ 2555657 (+) False G142443
TU168634 lncRNA downstream 56569 2554057 ~ 2556166 (+) False LOC117598105
TU168670 lncRNA downstream 67004 2564492 ~ 2571547 (+) True G142445
XM_034307634.1 mRNA upstream 9804 2475158 ~ 2477382 (+) False LOC117598104
XM_034307635.1 mRNA upstream 9804 2475158 ~ 2477382 (+) False LOC117598104
XM_034307638.1 mRNA upstream 80354 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 80354 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 103393 2374715 ~ 2383793 (+) True LOC117598106
XM_034307645.1 mRNA downstream 52817 2550305 ~ 2552377 (+) True LOC117598108
XM_034307636.1 mRNA downstream 56802 2554290 ~ 2558727 (+) False LOC117598105
XM_034307464.1 mRNA downstream 171639 2669127 ~ 2676154 (+) True LOC117598063
XM_034307465.1 mRNA downstream 171652 2669140 ~ 2676154 (+) False LOC117598063
XM_034307450.1 mRNA downstream 190307 2687795 ~ 2692842 (+) True LOC117598057
TU168662 other upstream 9228 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 130954 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 189480 2296293 ~ 2297706 (+) True LOC117598173
TU168667 other downstream 62323 2559811 ~ 2808637 (+) True LOC117598067
LOC113523831 other downstream 694452 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 700388 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 718489 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 719930 3217418 ~ 3217489 (+) True trnac-gca_2

Expression Profile