RNA id: TU168651


Basic Information

Item Value
RNA id TU168651
length 1414
lncRNA type read_through
GC content 0.36
exon number 3
gene id G142433
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2401923 ~ 2671465 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGGGCTTGATGGAGTCTACAGGCCTGCAGTATGGATTAGGGAAGCTCTTATATGTTTTCAGGTAAaacacaataatataataattgaagttattattactactattaacaATATTTAGTAATTCAAATTATATTCTAATTAGAACCTCAAATAGGCATTCATAGAGTCCAGTTACCATGGCATCCTAgtcaaataattatttatgtaacTTTCAGAACCATTTgatttaagtaataataaagcAAGCTAATAATAAGTAAACAGTAAGATAAAGTAAGTAAGATAAATTAGAAAAGGTCCATTTCCAGATCATGACAGAATTTAATTCTATAATAGCTTGAATATACGGGTCATTGCAGTAGAAGAGTTAGCTAGTCTCATATAGCTAGGCTATAGCACACTCACACTGATTAGCAAGCTGCTGTGGTGTTGTTAGCGTGAGTGTGACAATGCAGAAGCcgtctgtttttctgtgcttgtggtcctgttttgtgtgtttttaagtgTACAGGTTCACCAGAAGGGGTTTGTTCTAATCCGTTAGATGGGATTCACCAGCATGCAGTGCGTCTCTGCTTTAAAGATAGCTTCCtctcatttgtttaaattgctttacacacaacacacacaccactcaatCTTCACTCCAGACAACATCCCGACATTACTGACTACTGATATGAGCCGTCTAATGCTATAGTTTTGCGTTCTGTATTAAACGTAGTCTTTGGCAATAGCAAACTCCACCTGCTGCCTCCCTCTTGTTGTGGTCCAGGCGGAGAGCGTAACAGTGAGCTATAGATTTTTCTACCAGAAATCCTTTTGCTATAATGTGTTGATGCTaaatgtgttcctattaaacgGTTCTCCTCAGGGCTGGATATTCTGACGTATTTGATGCTGCTGAAACTGGTGGTGATTTACAGTGACATGACTTTGGCCATCTTGCCTTGAATTCAAACCtatgtgtttaatatgtttattaaaatgtgttatactatataattagataatatttgtttgttgtagAAAATCTGCACACACTGAGGGCACAATGGACATCAtgacctcttttttttaatttcttacacTGGGGGGAAAAACGTGCATCTCGGCACCTGCTGTTTTTACTGTATGCATATTCTACTGAATATTCCTAAAGATGGCAATTCTCCAATTAGAAACGCTCATTTTAAACAGGTGGAGTAGTTCATATGTATCTGGagcatattttaatttgtaaatattgtattaaaaaaaccttcaaGATATATACACTGTACCAATCATTGCCAGTATACATCCAATGAACTGTATTTCTACATAAATTCAGCAAAAGTCAACAAGAACTGTGAATAGAAAACTTAAATAGCtgtgtgctgtttattttatacagtattttttctaATCTGc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168637 lncRNA upstream 5672 2391344 ~ 2396251 (+) True G142420
TU168646 lncRNA upstream 29568 2372124 ~ 2372355 (+) True G142429
TU168606 lncRNA upstream 42466 2358799 ~ 2359457 (+) True G142411
TU168603 lncRNA upstream 57818 2335209 ~ 2344105 (+) True LOC117595676
TU168565 lncRNA upstream 100005 2298984 ~ 2301918 (+) True G142385
TU168684 lncRNA downstream 19955 2691420 ~ 2692839 (+) False LOC117598057
XR_004578792.1 lncRNA downstream 86261 2757726 ~ 2762429 (+) True LOC117598070
TU168686 lncRNA downstream 119134 2790599 ~ 2791137 (+) True G142458
XR_004578788.1 lncRNA downstream 134927 2806392 ~ 2807615 (+) False LOC117598067
XR_004578790.1 lncRNA downstream 152450 2823915 ~ 2832344 (+) False LOC117598069
XM_034307642.1 mRNA upstream 18130 2374715 ~ 2383793 (+) True LOC117598106
XM_034307643.1 mRNA upstream 25012 2374699 ~ 2376911 (+) False LOC117598106
XM_034307527.1 mRNA upstream 43930 2353535 ~ 2357993 (+) False LOC117595676
XM_034307544.1 mRNA upstream 99161 2301366 ~ 2302762 (+) True LOC117598085
XM_034307687.1 mRNA upstream 104217 2295159 ~ 2297706 (+) False LOC117598173
XM_034307450.1 mRNA downstream 16330 2687795 ~ 2692842 (+) True LOC117598057
XM_034307452.1 mRNA downstream 81964 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA downstream 81964 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA downstream 81964 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA downstream 81964 2753429 ~ 2756267 (+) False LOC117598059
TU168604 other upstream 45691 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 104217 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 104217 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 104217 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 113284 2288098 ~ 2288639 (+) False LOC117598174
LOC113523831 other downstream 520475 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 526411 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 544512 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 545953 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 547684 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile