RNA id: TU168654


Basic Information

Item Value
RNA id TU168654
length 287
lncRNA type read_through
GC content 0.34
exon number 2
gene id G142436
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2433259 ~ 2640505 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTTTTGTGTGTACTCTCCTCAATGATGCTAAAGTGATTTACTCTGTAACTGTAGATCAGGAACACGTGTAGGTCAGGCTCACTGCTAACgtagctcagtgtttacatTCACAATCTTTCACTCCAGTACTGTTTTAACACACCTTTATTAAATCACCCTCTCCACTAAAATAAACAAGACTGGTCTTAACTCTGCAATGTTTCACATTAGTAATACTATAACTAATATGTGATTActatataaagttataatatTTCACAGTAACGTCAACTGAATATTTTGACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578831.1 lncRNA upstream 3344 2419974 ~ 2429915 (+) True LOC117598110
XR_004578832.1 lncRNA upstream 3344 2419974 ~ 2429915 (+) False LOC117598110
TU168637 lncRNA upstream 37008 2391344 ~ 2396251 (+) True G142420
TU168646 lncRNA upstream 60904 2372124 ~ 2372355 (+) True G142429
TU168606 lncRNA upstream 73802 2358799 ~ 2359457 (+) True G142411
TU168675 lncRNA downstream 1339 2641844 ~ 2830384 (+) True LOC117598069
XR_004578789.1 lncRNA downstream 8928 2649433 ~ 2649912 (+) True LOC117598068
TU168682 lncRNA downstream 26553 2667058 ~ 3024410 (+) True G142454
TU168684 lncRNA downstream 50915 2691420 ~ 2692839 (+) False LOC117598057
XR_004578792.1 lncRNA downstream 117221 2757726 ~ 2762429 (+) True LOC117598070
XM_034307638.1 mRNA upstream 26427 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 26427 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 49466 2374715 ~ 2383793 (+) True LOC117598106
XM_034307643.1 mRNA upstream 56348 2374699 ~ 2376911 (+) False LOC117598106
XM_034307527.1 mRNA upstream 75266 2353535 ~ 2357993 (+) False LOC117595676
XM_034307464.1 mRNA downstream 28622 2669127 ~ 2676154 (+) True LOC117598063
XM_034307465.1 mRNA downstream 28635 2669140 ~ 2676154 (+) False LOC117598063
XM_034307450.1 mRNA downstream 47290 2687795 ~ 2692842 (+) True LOC117598057
XM_034307452.1 mRNA downstream 112924 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA downstream 112924 2753429 ~ 2756267 (+) False LOC117598059
TU168604 other upstream 77027 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 135553 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 135553 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 135553 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 144620 2288098 ~ 2288639 (+) False LOC117598174
LOC113523831 other downstream 551435 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 557371 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 575472 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 576913 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 578644 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile