RNA id: TU168658


Basic Information

Item Value
RNA id TU168658
length 233
lncRNA type read_through
GC content 0.33
exon number 2
gene id G142440
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2456518 ~ 2720848 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGAATAACCGAAAAAAAAACCCcgtaaactgtaaatataaataaatgaacgtCAGTCTGTGAGAGatgttagcttagcttagcttaactTCTCATCTCAGTTCAAACAATATACGAAAAGgTTTGTTCGCTTctagtaaatgtaaacacaggAATAAAACCACACAACAAACCGAAAAGTCTTACACTTccgttaaaaaaagaaaacaaaacacgaATTACCTTTAGAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168653 lncRNA upstream 22171 2417954 ~ 2434347 (+) True G142435
XR_004578831.1 lncRNA upstream 26603 2419974 ~ 2429915 (+) True LOC117598110
XR_004578832.1 lncRNA upstream 26603 2419974 ~ 2429915 (+) False LOC117598110
TU168637 lncRNA upstream 60267 2391344 ~ 2396251 (+) True G142420
TU168646 lncRNA upstream 84163 2372124 ~ 2372355 (+) True G142429
XR_004578792.1 lncRNA downstream 36878 2757726 ~ 2762429 (+) True LOC117598070
TU168686 lncRNA downstream 69751 2790599 ~ 2791137 (+) True G142458
XR_004578788.1 lncRNA downstream 85544 2806392 ~ 2807615 (+) False LOC117598067
XR_004578790.1 lncRNA downstream 103067 2823915 ~ 2832344 (+) False LOC117598069
XR_004578791.1 lncRNA downstream 103776 2824624 ~ 2832344 (+) False LOC117598069
XM_034307638.1 mRNA upstream 49686 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 49686 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 72725 2374715 ~ 2383793 (+) True LOC117598106
XM_034307643.1 mRNA upstream 79607 2374699 ~ 2376911 (+) False LOC117598106
XM_034307527.1 mRNA upstream 98525 2353535 ~ 2357993 (+) False LOC117595676
XM_034307452.1 mRNA downstream 32581 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA downstream 32581 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA downstream 32581 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA downstream 32581 2753429 ~ 2756267 (+) False LOC117598059
XM_034307448.1 mRNA downstream 172639 2893487 ~ 2898257 (+) True LOC117598055
TU168604 other upstream 100286 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 158812 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 158812 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 158812 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 167879 2288098 ~ 2288639 (+) False LOC117598174
LOC113523831 other downstream 471092 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 477028 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 495129 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 496570 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 498301 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile