RNA id: TU168659


Basic Information

Item Value
RNA id TU168659
length 354
lncRNA type intronic
GC content 0.43
exon number 2
gene id G142441
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2464284 ~ 2470182 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTCTGccattgtgtatttgttttgccTTTTGTGTATGACCCTGTTTACGAATTACTGCCTTTGccttgtgttttggatttggtTACCTCGCTGcttgacttcctggtttttcGGACTTTGCTCTTGTTGCTTGTTTATGTTTTCTGCCTGCTGTTTTGGATTTGCTTGCTATTAAACTGCTTATGGATCCTACACAACCCACCTCCAGCGATTCTTTACAATAGTATAATTTTTTCTTCAATTGCTTCAAGCAGTTTCATCTTTAAAGCATCGAGGGGCACTAtatctctctctgactctcgcTGGAGGCGGTcgcattttttcctctctctgctgtgtctgtgtgcctcTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168653 lncRNA upstream 29937 2417954 ~ 2434347 (+) True G142435
XR_004578831.1 lncRNA upstream 34369 2419974 ~ 2429915 (+) True LOC117598110
XR_004578832.1 lncRNA upstream 34369 2419974 ~ 2429915 (+) False LOC117598110
TU168637 lncRNA upstream 68033 2391344 ~ 2396251 (+) True G142420
TU168646 lncRNA upstream 91929 2372124 ~ 2372355 (+) True G142429
TU168661 lncRNA downstream 6252 2476434 ~ 2477958 (+) False LOC117598104
TU168618 lncRNA downstream 8317 2478499 ~ 3032526 (+) True LOC113523823
XR_004578833.1 lncRNA downstream 17004 2487186 ~ 2497488 (+) False LOC117598111
TU168638 lncRNA downstream 25814 2495996 ~ 2497632 (+) True LOC117598111
TU168666 lncRNA downstream 71068 2541250 ~ 2555657 (+) True G142443
XM_034307638.1 mRNA upstream 57452 2398813 ~ 2406832 (+) False LOC117598105
XM_034307639.1 mRNA upstream 57452 2398813 ~ 2406832 (+) False LOC117598105
XM_034307642.1 mRNA upstream 80491 2374715 ~ 2383793 (+) True LOC117598106
XM_034307643.1 mRNA upstream 87373 2374699 ~ 2376911 (+) False LOC117598106
XM_034307527.1 mRNA upstream 106291 2353535 ~ 2357993 (+) False LOC117595676
XM_034307634.1 mRNA downstream 4976 2475158 ~ 2477382 (+) False LOC117598104
XM_034307635.1 mRNA downstream 4976 2475158 ~ 2477382 (+) False LOC117598104
XM_034307645.1 mRNA downstream 80123 2550305 ~ 2552377 (+) True LOC117598108
XM_034307636.1 mRNA downstream 84108 2554290 ~ 2558727 (+) False LOC117598105
XM_034307464.1 mRNA downstream 198945 2669127 ~ 2676154 (+) True LOC117598063
TU168604 other upstream 108052 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 166578 2296293 ~ 2297706 (+) True LOC117598173
XR_004578867.1 other upstream 166578 2296633 ~ 2297706 (+) False LOC117598173
XR_004578866.1 other upstream 166578 2296959 ~ 2297706 (+) False LOC117598173
XR_004578868.1 other upstream 175645 2288098 ~ 2288639 (+) False LOC117598174
TU168662 other downstream 5022 2475204 ~ 2477958 (+) True LOC117598104
TU168667 other downstream 89629 2559811 ~ 2808637 (+) True LOC117598067
LOC113523831 other downstream 721758 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 727694 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 745795 3215977 ~ 3216048 (+) True trnac-gca_1

Expression Profile