RNA id: XR_004578791.1


Basic Information

Item Value
RNA id XR_004578791.1
length 2629
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC117598069
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2641844 ~ 2832344 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aagagaattgattagttcatctctcgaGTCTTTCGAGTCGTTCGTTCTTTTGTCACGTGAAATGACAGCATTGGATAGAGAAATCAGTTAATTTACAACCTTCCTTACAAATgcatagtaattattattattattattattacgttaTAGTATTAGATAGACTTGTCAGATAAGAGGTGAGGTGAGCTAATCGTAGACTAAAGATCCaggatcatataatcatataaatcatattGAGCACCTGTGGGGCATCCTCAAGAGGAAGGTGGAGAAGCGCCATGTGCCTAACATCCAGCAGCTCCGTGATGTCATTATGGAGGAGTGGAAGAGGATCCCAGCAACAATCTGTGCAGCTCTGGTGAATTCCATGCCTAGGAGGATTAAGGAAGTGAGGCAGATCTCTTGGAGCGTCTCACTGTCTGGTAGCTCGTGTAGACACCTGCATCAGTAAGTGTCAGATACAGTGATCTCAGCTTCTGCAGAGAGGAGGCCTGAGATGGGAAATTAAATTCTAGATTAATCTGGACAGTGCACTTATTTTAAGATGCTCTTTACAATCCAAGACTGCAGCCTGACCACATATCATTTTACTGTACACAATAAGAGACTGcatacaaaacatacaaataatcACAACTCATTactgtgtgagtgaatgtgcaTGTGAATGACACCATCCTAGTTTGTTTATccacagcatgtttttaaatatataatcatatcatcatcatcatcatcatcatcacatcatgcATTCTCTGCGCATAGACACAACCAGTGATGTCATGCATCTGTAACTACAGTGTATAACAGTTAAAGGTTTGGATTGTGATATGGAAAGCAGTCATGGGCTGCAGTTACAGACAGTGAAACTGCAGCAGCAATCAGACGCAACAGGCGCAAACTCTGTGTGCACGAGCGCGGAACATCACTGTAAGAAATGTGCTCTGCCCAGCTTCCACTCCAGAGTAGACAGGAAGCTGCAGATGCTTTAACCGCAGCAGTAACGCCATCGTGTATGGTGCAGCTCATAGAAGCATGAAGGCAGAAGAGCGACTGCAGATATCAGAATGATCCACATCATGTGAGATTACTAGTGCTGATGCATGGAGTTAATGTTAAAGAGCGACTGAATAACGTGGCATTCTCTCAGTTTCAGGGGTTTCAGTACCTCCATGGAGAGATGTGCGTTTCCGTTGGTTTTgaacatacttttttttgcacaggaTCAGGGATGTATGATAAAGGATAAAACAGTCATAACggtaactatttttatttatttattttttctatcttctaaaaaaaaaaagtcaatgagAAAGTCCTGTAAATCGATGAACTTTGTGACCTTCACAACACTTCCTCATTCTCATAAAACCACCTGAGTCCTGATGAAAGCCATCATCACATCTCACATAATCACATCTCATTTTAACtctcatcacatcatcacttctcacattttaatcatttcttacCTGAACAGATAATCCTAATAATTCAGTGTTACAATATAAATACCATTGAGGCTTACCTTGGAAGAAGAAGGAGAGCGAGCACGTGCCCAGCCATGCACATGTTTCTCTGCAgttcctttttttgttctttggggtttttttgttttttttgaccTGTGTGCATACCGCCTCCTACTGTCTTCAGGTCatggtttattattataaaaaaaataaattaaaaaaaaaacttgctccATGAGGGTTCAGCTCCTCCATCCTCCACACACAAGCTCTCAGGCTCCGGAGTGGAGCAGAGCATCACtacttcattttaatataaatcctTGCATTTAGTCTTGTACTATTATATTGAATATGTATTGAAAAAGAAACTCATATCCCAGTAGATATTCCAAGTCCTTCTCCTTCTTacccattttatttaaatatgttattaagTCCTTTCTCTCTTCGCTGTACCTTTCACAATCATATGTTGtgttctattgtttttttctcacaacAATACTCACATAAATCACTATCACCTTCTCCAGGTAAGAACAGTGAGGCATTCAGTCCTGAGTGACCAAGTCTTAGCCTAGTTATTATGACCTCTTCCTTCCTATTTCTACCACACATAGTTCTTTTAGTATCTaccaaatttttaattttatatcaaTGCCTTTCCTTAGTGTCCGTATTCCAAATTTCTTGCCGttcttttgtaatatttttcttaataataCTCTTAGATTCTCCTTTGCCTAAGGGCACATTGATGACCACTTCCTtcctttttaaagctttttttgttaGCTCATTCGCTGTTTTGTTTCCAGATATCCCTGCATGTGCTGGTACCCAGTAAACCTTTTTACTACTCCTTTTCTTTGTATACGCCATAATAACAAACATCTCACTCATCAAGTCTTCTCGAGATGATTGATGGGTAGATAGTGATGTTAAGACAGAAGCAGAATCAGAACATATCACCACTCTATCTATTTCCTCTACCCACATCAAACCTACTATGATAGCGACCATTTCAACAGCATATATAGATAACTCCAATGTTAATCTTTTAGTTATAGTTGTATCCAGATCTGGGATATACAGTGGTCCTttaaagtttgtgaaccctctataattttctatatatctgcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168672 lncRNA upstream 3936 2579614 ~ 2820688 (+) False G142446
XR_004578788.1 lncRNA upstream 17009 2806392 ~ 2807615 (+) False LOC117598067
TU168686 lncRNA upstream 33487 2790599 ~ 2791137 (+) True G142458
XR_004578792.1 lncRNA upstream 62195 2757726 ~ 2762429 (+) True LOC117598070
TU168658 lncRNA upstream 103776 2456518 ~ 2720848 (+) True G142440
TU168702 lncRNA downstream 24586 2856930 ~ 2993966 (+) True G142469
TU168715 lncRNA downstream 118723 2951067 ~ 2993474 (+) False G142478
TU168716 lncRNA downstream 118723 2951067 ~ 2993474 (+) True G142478
TU168704 lncRNA downstream 119730 2952074 ~ 2993966 (+) False G142469
TU168740 lncRNA downstream 271075 3103419 ~ 3104643 (+) True G142502
XM_034307452.1 mRNA upstream 68357 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA upstream 68357 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA upstream 68357 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA upstream 68357 2753429 ~ 2756267 (+) False LOC117598059
XM_034307450.1 mRNA upstream 131782 2687795 ~ 2692842 (+) True LOC117598057
XM_034307448.1 mRNA downstream 61143 2893487 ~ 2898257 (+) True LOC117598055
XM_034307445.1 mRNA downstream 181738 3014082 ~ 3032526 (+) False LOC113523823
XM_034307446.1 mRNA downstream 193960 3026304 ~ 3032526 (+) False LOC113523823
XM_026909910.2 mRNA downstream 223279 3055623 ~ 3061337 (+) True LOC113523850
XM_026909916.2 mRNA downstream 285944 3118288 ~ 3123714 (+) True rps18
TU168667 other upstream 15987 2559811 ~ 2808637 (+) True LOC117598067
TU168662 other upstream 346666 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 468392 2339449 ~ 2356232 (+) False LOC117595676
XR_004578867.1 other upstream 526918 2296633 ~ 2297706 (+) False LOC117598173
LOC113523831 other downstream 359596 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 365532 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 383633 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 385074 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 386805 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile