RNA id: TU168682


Basic Information

Item Value
RNA id TU168682
length 414
lncRNA type read_through
GC content 0.47
exon number 2
gene id G142454
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2667058 ~ 3024410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cactgacaggtgaagtgaataatattgattatctcgttacaatagcacctgtcaagggttgagatatattaggcagcaagtgaccagtcggttctcgaagttgatgtgttggaaacaggaaaaagccaggtgcgtgtgcatcgtttacctggggaagagatggcaccggcatgcactatgggaagaacgcaaactggcggaggcagtgtgatgctctgggcaatgttctgctgggaaacttcgggtcctggcattcatgtggatgttattttgacacgtaccacctacctaaacattgttccagaccaggtacaccccttcatggcaacggtattccctaatggaagtgacttctttcagcaggataatgctccctgccacactgtaaaaattgttcaggaatggttcgaggaa

Function

GO: NA

KEGG:

id description
ko04710 Circadian rhythm

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578789.1 lncRNA upstream 17146 2649433 ~ 2649912 (+) True LOC117598068
TU168654 lncRNA upstream 26553 2433259 ~ 2640505 (+) True G142436
TU168670 lncRNA upstream 95511 2564492 ~ 2571547 (+) True G142445
TU168621 lncRNA upstream 107727 2544329 ~ 2559331 (+) False LOC113523823
TU168634 lncRNA upstream 110892 2554057 ~ 2556166 (+) False LOC117598105
TU168740 lncRNA downstream 79009 3103419 ~ 3104643 (+) True G142502
TU168741 lncRNA downstream 79662 3104072 ~ 3104643 (+) False G142502
TU168743 lncRNA downstream 85107 3109517 ~ 3110320 (+) True G142504
TU168772 lncRNA downstream 135036 3159446 ~ 3193362 (+) False G142521
TU168773 lncRNA downstream 135036 3159446 ~ 3176981 (+) False G142521
XM_034307641.1 mRNA upstream 108331 2411742 ~ 2558727 (+) False LOC117598105
XM_034307446.1 mRNA downstream 1894 3026304 ~ 3032526 (+) False LOC113523823
XM_026909910.2 mRNA downstream 31213 3055623 ~ 3061337 (+) True LOC113523850
XM_026909916.2 mRNA downstream 93878 3118288 ~ 3123714 (+) True rps18
XM_034307287.1 mRNA downstream 121628 3146038 ~ 3153846 (+) True slc39a7
XM_026909884.2 mRNA downstream 269389 3293799 ~ 3308324 (+) True cratb
TU168662 other upstream 189100 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 310826 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 369352 2296293 ~ 2297706 (+) True LOC117598173
LOC113523831 other downstream 167530 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 173466 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 191567 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 193008 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 194739 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile