RNA id: XM_034307450.1


Basic Information

Item Value
RNA id XM_034307450.1
length 929
RNA type mRNA
GC content 0.41
exon number 5
gene id LOC117598057
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2687795 ~ 2692842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAAGCATCACCACTTTGTAGGCCACTGTAGCATCTCAGCAAGAAATGGCCAATCTCCTGGATCTTTTTACACTACTGCTGCTGTTTGGTTCCTTCACAACGAGTCTCCTTCAGATCACTTCAACTGATCATTTATCTGTCCATCCTGGACAGAACATCACCCTGCTCTGTAACATCACTAATTATTCTGAGATATCATGGTATCGACTGAGATCTGAGGAGGTGAAGCTGCTGATATCTGCTGTAAAAGGGAAAGTGACGAAAACCTTTGACCTCAGTTATAATGTGACCGAGAGTCACTTTGATATAACAGAAAGCAGCAGTTCAGTCAGTTTAGTGATTATTGGAGTTAGAGAGACAGATCTGGGATTTTATTACTGTGGAGGTCGAAACAAAACGACACACATTCAGTTTGGGAAACCCATCAGACTGAACTTTACAGAAGACCAACATCGTGAGACTGATAACTCGTCTGAGCCTCCACATACCCAGCAGTCAGGATCAGAGCTCtggattataatgagtgtgtttctgtgtgcctCTGTCCTATTAAACCTCATCTTCATGTTCTGCTGCAGGCTCAAAGGAAAGTCCGAATTTTCATGCAGTTGCTGCAGTAACACCACAGACGCCACTGAAAAGGAAGAAAATGTGCATTATGCCAGCGTCCAACTCAAAAGTAGGTCCAGAGCAGCTGCTCAGAAAAACGCAGCATCAGATTCGGACAGTGTGACCTATGCAACAGTCGCCTCACAGCCTCGGAGACACTGACCAGCACAAGGTGTCATAAATCTGTTATTACAgcacaaataaaactgtgttGTTCCCTTTGGTTCTTTtcttaatttgttaaaaaatagattatttagctgaattctttaaaatgaactgttttGGACTAAATATTTGGaattaatgcataaatatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168651 lncRNA upstream 16330 2401923 ~ 2671465 (+) True G142433
XR_004578789.1 lncRNA upstream 37883 2649433 ~ 2649912 (+) True LOC117598068
TU168654 lncRNA upstream 47290 2433259 ~ 2640505 (+) True G142436
TU168670 lncRNA upstream 116248 2564492 ~ 2571547 (+) True G142445
TU168621 lncRNA upstream 128464 2544329 ~ 2559331 (+) False LOC113523823
XR_004578792.1 lncRNA downstream 64884 2757726 ~ 2762429 (+) True LOC117598070
TU168686 lncRNA downstream 97757 2790599 ~ 2791137 (+) True G142458
XR_004578788.1 lncRNA downstream 113550 2806392 ~ 2807615 (+) False LOC117598067
XR_004578790.1 lncRNA downstream 131073 2823915 ~ 2832344 (+) False LOC117598069
XR_004578791.1 lncRNA downstream 131782 2824624 ~ 2832344 (+) False LOC117598069
XM_034307464.1 mRNA upstream 11641 2669127 ~ 2676154 (+) True LOC117598063
XM_034307465.1 mRNA upstream 11641 2669140 ~ 2676154 (+) False LOC117598063
XM_034307641.1 mRNA upstream 129068 2411742 ~ 2558727 (+) False LOC117598105
XM_034307452.1 mRNA downstream 60587 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA downstream 60587 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA downstream 60587 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA downstream 60587 2753429 ~ 2756267 (+) False LOC117598059
XM_034307448.1 mRNA downstream 200645 2893487 ~ 2898257 (+) True LOC117598055
TU168662 other upstream 209837 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 331563 2339449 ~ 2356232 (+) False LOC117595676
XR_004578865.1 other upstream 390089 2296293 ~ 2297706 (+) True LOC117598173
LOC113523831 other downstream 499098 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 505034 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 523135 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 524576 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 526307 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile