RNA id: TU168702


Basic Information

Item Value
RNA id TU168702
length 369
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G142469
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2856930 ~ 2993966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGTTAGTTCTGTCCACGTGTTCCATCACAAAGGATTTATAGGCACCGTCATCAGTGATTCTGACGTTCTTCAACACCAGGGAACAGTTTCCTTTACGCAGTTCGTCTACAGGAACGTCCACACGTCCTTCATATCCTGAGCCTATATACTTACCATCACTGCTTCGGTCAAACACAACATCAACATCGGTGCGCCATCGAACGTGTGGTGTTTCTGTGAACTCCTTTCTCAGGTTACATGGCAGGACGACTGTGGAACCCACTCGAGCTGATACAGTAATGTGAGAATCTGCACTGATGGAATCTGTAGAGGGAAACATTACAATCTACATGATctgtagcattttattttatttgtagtaTATTTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578790.1 lncRNA upstream 24586 2823915 ~ 2832344 (+) False LOC117598069
XR_004578791.1 lncRNA upstream 24586 2824624 ~ 2832344 (+) False LOC117598069
TU168675 lncRNA upstream 26546 2641844 ~ 2830384 (+) True LOC117598069
TU168672 lncRNA upstream 36242 2579614 ~ 2820688 (+) False G142446
XR_004578788.1 lncRNA upstream 49315 2806392 ~ 2807615 (+) False LOC117598067
TU168740 lncRNA downstream 109453 3103419 ~ 3104643 (+) True G142502
TU168741 lncRNA downstream 110106 3104072 ~ 3104643 (+) False G142502
TU168743 lncRNA downstream 115551 3109517 ~ 3110320 (+) True G142504
TU168772 lncRNA downstream 165480 3159446 ~ 3193362 (+) False G142521
TU168773 lncRNA downstream 165480 3159446 ~ 3176981 (+) False G142521
XM_034307452.1 mRNA upstream 100663 2753429 ~ 2756267 (+) True LOC117598059
XM_034307454.1 mRNA upstream 100663 2753429 ~ 2756267 (+) False LOC117598059
XM_034307455.1 mRNA upstream 100663 2753429 ~ 2756267 (+) False LOC117598059
XM_034307453.1 mRNA upstream 100663 2753429 ~ 2756267 (+) False LOC117598059
XM_034307450.1 mRNA upstream 164088 2687795 ~ 2692842 (+) True LOC117598057
XM_034307445.1 mRNA downstream 20116 3014082 ~ 3032526 (+) False LOC113523823
XM_034307446.1 mRNA downstream 32338 3026304 ~ 3032526 (+) False LOC113523823
XM_026909910.2 mRNA downstream 61657 3055623 ~ 3061337 (+) True LOC113523850
XM_026909916.2 mRNA downstream 124322 3118288 ~ 3123714 (+) True rps18
XM_034307287.1 mRNA downstream 152072 3146038 ~ 3153846 (+) True slc39a7
TU168667 other upstream 48293 2559811 ~ 2808637 (+) True LOC117598067
TU168662 other upstream 378972 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 500698 2339449 ~ 2356232 (+) False LOC117595676
XR_004578867.1 other upstream 559224 2296633 ~ 2297706 (+) False LOC117598173
LOC113523831 other downstream 197974 3191940 ~ 3193368 (+) True LOC113523831
LOC117598030 other downstream 203910 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 222011 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 223452 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 225183 3219149 ~ 3219220 (+) True trnac-gca_3

Expression Profile