Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU168716 |
| length | 886 |
| lncRNA type | inter_gene |
| GC content | 0.37 |
| exon number | 2 |
| gene id | G142478 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 2951067 ~ 2993474 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| XR_004578790.1 | lncRNA | upstream | 118723 | 2823915 ~ 2832344 (+) | False | LOC117598069 |
| XR_004578791.1 | lncRNA | upstream | 118723 | 2824624 ~ 2832344 (+) | False | LOC117598069 |
| TU168675 | lncRNA | upstream | 120683 | 2641844 ~ 2830384 (+) | True | LOC117598069 |
| TU168672 | lncRNA | upstream | 130379 | 2579614 ~ 2820688 (+) | False | G142446 |
| XR_004578788.1 | lncRNA | upstream | 143452 | 2806392 ~ 2807615 (+) | False | LOC117598067 |
| TU168740 | lncRNA | downstream | 109945 | 3103419 ~ 3104643 (+) | True | G142502 |
| TU168741 | lncRNA | downstream | 110598 | 3104072 ~ 3104643 (+) | False | G142502 |
| TU168743 | lncRNA | downstream | 116043 | 3109517 ~ 3110320 (+) | True | G142504 |
| TU168772 | lncRNA | downstream | 165972 | 3159446 ~ 3193362 (+) | False | G142521 |
| TU168773 | lncRNA | downstream | 165972 | 3159446 ~ 3176981 (+) | False | G142521 |
| XM_034307448.1 | mRNA | upstream | 52810 | 2893487 ~ 2898257 (+) | True | LOC117598055 |
| XM_034307452.1 | mRNA | upstream | 194800 | 2753429 ~ 2756267 (+) | True | LOC117598059 |
| XM_034307445.1 | mRNA | downstream | 20608 | 3014082 ~ 3032526 (+) | False | LOC113523823 |
| XM_034307446.1 | mRNA | downstream | 32830 | 3026304 ~ 3032526 (+) | False | LOC113523823 |
| XM_026909910.2 | mRNA | downstream | 62149 | 3055623 ~ 3061337 (+) | True | LOC113523850 |
| XM_026909916.2 | mRNA | downstream | 124814 | 3118288 ~ 3123714 (+) | True | rps18 |
| XM_034307287.1 | mRNA | downstream | 152564 | 3146038 ~ 3153846 (+) | True | slc39a7 |
| TU168667 | other | upstream | 142430 | 2559811 ~ 2808637 (+) | True | LOC117598067 |
| TU168662 | other | upstream | 473109 | 2475204 ~ 2477958 (+) | True | LOC117598104 |
| TU168604 | other | upstream | 594835 | 2339449 ~ 2356232 (+) | False | LOC117595676 |
| XR_004578867.1 | other | upstream | 653361 | 2296633 ~ 2297706 (+) | False | LOC117598173 |
| LOC113523831 | other | downstream | 198466 | 3191940 ~ 3193368 (+) | True | LOC113523831 |
| LOC117598030 | other | downstream | 204402 | 3197876 ~ 3199324 (+) | True | LOC117598030 |
| trnac-gca_1 | other | downstream | 222503 | 3215977 ~ 3216048 (+) | True | trnac-gca_1 |
| trnac-gca_2 | other | downstream | 223944 | 3217418 ~ 3217489 (+) | True | trnac-gca_2 |
| trnac-gca_3 | other | downstream | 225675 | 3219149 ~ 3219220 (+) | True | trnac-gca_3 |
