RNA id: TU168772


Basic Information

Item Value
RNA id TU168772
length 703
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id G142521
representative False

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3159446 ~ 3199331 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTGAAGttgctgagcagcagctctcagtcatgaagtgttaaagccacagggctataaacactcgcagAGCACTGAAGCATGGACTGCaaatgcaaagtgtgtgtgtctgtgtgtgtctgtgtgtgtgtgtgtgtgtctgtgtgtgtgcgtgcactgCACTGTGAAGGAGGTTTTTGTACGATGGCTTCATTAGAATGTAACACTGTGGTGGGCTTTTGGTGGAGGCACCAGAATCATTGTGAACAAGGGTCCCTCCGTGTCTCTGCTCCCTCCGTCCCCTCTGCAGCTGTGTGAGGGATCGGCctcgctgctctgcctgctgtctgACTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCAGAGGTGAAGGACGGGGTTCTGACCAGcgcagaagaagagaagaagggcGGTTACACACGCAGTagcaccctgaccctcagcaaagacctctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGTGTCAATCATCCAGTCACGTTCAGAAAGAGTCAGTGTGAAGGCTAGTGGCTCCAAGATAGAGTTTAACATAGAGCTGCTTATGATCCATCTACAATAGAGTTTCAATTCTACACAATGCTgccatttctgtctttactctgttcactgtcctgttgatcttcctgtagtttttgctgaaataaagctgaattttGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168743 lncRNA upstream 49126 3109517 ~ 3110320 (+) True G142504
TU168740 lncRNA upstream 54803 3103419 ~ 3104643 (+) True G142502
TU168741 lncRNA upstream 54803 3104072 ~ 3104643 (+) False G142502
TU168704 lncRNA upstream 165480 2952074 ~ 2993966 (+) False G142469
TU168715 lncRNA upstream 165972 2951067 ~ 2993474 (+) False G142478
TU168769 lncRNA downstream 4346 3197708 ~ 3199331 (+) False G142521
TU168783 lncRNA downstream 11099 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA downstream 18001 3211363 ~ 3215777 (+) True LOC117598172
TU168782 lncRNA downstream 35944 3229306 ~ 3230300 (+) True G142524
TU168808 lncRNA downstream 89766 3283128 ~ 3352119 (+) True G142545
XM_034307287.1 mRNA upstream 5600 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 35732 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 98109 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 126920 3014082 ~ 3032526 (+) False LOC113523823
XM_034307446.1 mRNA upstream 126920 3026304 ~ 3032526 (+) False LOC113523823
XM_026909884.2 mRNA downstream 100437 3293799 ~ 3308324 (+) True cratb
XM_034307426.1 mRNA downstream 153210 3346572 ~ 3356643 (+) True ppt2b
XM_026909905.2 mRNA downstream 169038 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 190818 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 194901 3388263 ~ 3396036 (+) False LOC113523845
TU168667 other upstream 350809 2559811 ~ 2808637 (+) True LOC117598067
TU168662 other upstream 681488 2475204 ~ 2477958 (+) True LOC117598104
TU168604 other upstream 803214 2339449 ~ 2356232 (+) False LOC117595676
XR_004578867.1 other upstream 861740 2296633 ~ 2297706 (+) False LOC117598173
LOC117598030 other downstream 4514 3197876 ~ 3199324 (+) True LOC117598030
trnac-gca_1 other downstream 22615 3215977 ~ 3216048 (+) True trnac-gca_1
trnac-gca_2 other downstream 24056 3217418 ~ 3217489 (+) True trnac-gca_2
trnac-gca_3 other downstream 25787 3219149 ~ 3219220 (+) True trnac-gca_3
LOC117597933 other downstream 55162 3248524 ~ 3249755 (+) True LOC117597933

Expression Profile