Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU168783 |
| length | 1121 |
| lncRNA type | inter_gene |
| GC content | 0.45 |
| exon number | 5 |
| gene id | LOC117598172 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047603.1 |
| NCBI id | CM018549.1 |
| chromosome length | 29458963 |
| location | 3204461 ~ 3215786 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU168768 | lncRNA | upstream | 5130 | 3192111 ~ 3199331 (+) | False | G142521 |
| TU168769 | lncRNA | upstream | 5130 | 3197708 ~ 3199331 (+) | False | G142521 |
| TU168772 | lncRNA | upstream | 11099 | 3159446 ~ 3193362 (+) | False | G142521 |
| TU168774 | lncRNA | upstream | 19640 | 3183318 ~ 3184821 (+) | True | G142521 |
| XR_003402460.2 | lncRNA | upstream | 19762 | 3183316 ~ 3184699 (+) | True | LOC113523814 |
| TU168782 | lncRNA | downstream | 13520 | 3229306 ~ 3230300 (+) | True | G142524 |
| TU168808 | lncRNA | downstream | 67342 | 3283128 ~ 3352119 (+) | True | G142545 |
| TU168817 | lncRNA | downstream | 96975 | 3312761 ~ 3321168 (+) | True | G142553 |
| TU168839 | lncRNA | downstream | 163935 | 3379721 ~ 3381739 (+) | True | G142573 |
| TU168855 | lncRNA | downstream | 175119 | 3390905 ~ 3391147 (+) | True | G142580 |
| XM_034307287.1 | mRNA | upstream | 50615 | 3146038 ~ 3153846 (+) | True | slc39a7 |
| XM_026909916.2 | mRNA | upstream | 80747 | 3118288 ~ 3123714 (+) | True | rps18 |
| XM_026909910.2 | mRNA | upstream | 143124 | 3055623 ~ 3061337 (+) | True | LOC113523850 |
| XM_034307445.1 | mRNA | upstream | 171935 | 3014082 ~ 3032526 (+) | False | LOC113523823 |
| XM_026909884.2 | mRNA | downstream | 78013 | 3293799 ~ 3308324 (+) | True | cratb |
| XM_034307426.1 | mRNA | downstream | 130786 | 3346572 ~ 3356643 (+) | True | ppt2b |
| XM_026909905.2 | mRNA | downstream | 146614 | 3362400 ~ 3368547 (+) | True | rps5 |
| XM_034307220.1 | mRNA | downstream | 168394 | 3384180 ~ 3396036 (+) | False | LOC113523845 |
| XM_026909906.2 | mRNA | downstream | 172477 | 3388263 ~ 3396036 (+) | False | LOC113523845 |
| LOC117598030 | other | upstream | 5137 | 3197876 ~ 3199324 (+) | True | LOC117598030 |
| LOC113523831 | other | upstream | 11093 | 3191940 ~ 3193368 (+) | True | LOC113523831 |
| TU168667 | other | upstream | 395824 | 2559811 ~ 2808637 (+) | True | LOC117598067 |
| TU168662 | other | upstream | 726503 | 2475204 ~ 2477958 (+) | True | LOC117598104 |
| TU168604 | other | upstream | 848229 | 2339449 ~ 2356232 (+) | False | LOC117595676 |
| trnac-gca_1 | other | downstream | 191 | 3215977 ~ 3216048 (+) | True | trnac-gca_1 |
| trnac-gca_2 | other | downstream | 1632 | 3217418 ~ 3217489 (+) | True | trnac-gca_2 |
| trnac-gca_3 | other | downstream | 3363 | 3219149 ~ 3219220 (+) | True | trnac-gca_3 |
| LOC117597933 | other | downstream | 32738 | 3248524 ~ 3249755 (+) | True | LOC117597933 |
| LOC113523833 | other | downstream | 35599 | 3251385 ~ 3251999 (+) | True | LOC113523833 |
