RNA id: TU168808


Basic Information

Item Value
RNA id TU168808
length 522
lncRNA type read_through
GC content 0.35
exon number 2
gene id G142545
representative True

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3283128 ~ 3352119 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGgttgtttcatatttatttggATTCGTGAATATCTGATTTCCAGACTTTCTGTGGTGAAAAAAAGTAGAAACAATTAAAAGTGagtcagtgttttatttgtgtgtgctgagacagagacacattCTTCATTACGAATGATAAATCATGTATCTTACATGGATCACATTGGTGTTGGATCTACATGCGATACAGTGAGGGTGTAGGCTCTCCCTCCATCAGCGCCTTTACTCCAAATCACTTTACACTGATACTGTCCTCTGTAACGCTcctgagttactgctaccatcctggagttgattattttcctataacagcacatccctaagtgttttaatcctcttacaccacagcagtttgctgaTGATtaaaatttcttatttattaataaacaatatctcatacttttttatccgttAATAGTTACATATCAAAATGTAGAAACAATTAAAAGTGAGTCACAgtcttactttttttaaatttactatttgtgtgtgtgtgtgtgtgtgtGGACAGACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168782 lncRNA upstream 52828 3229306 ~ 3230300 (+) True G142524
TU168783 lncRNA upstream 67342 3204461 ~ 3215786 (+) False LOC117598172
XR_004578864.1 lncRNA upstream 67351 3211363 ~ 3215777 (+) True LOC117598172
TU168768 lncRNA upstream 83797 3192111 ~ 3199331 (+) False G142521
TU168769 lncRNA upstream 83797 3197708 ~ 3199331 (+) False G142521
TU168839 lncRNA downstream 27602 3379721 ~ 3381739 (+) True G142573
TU168855 lncRNA downstream 38786 3390905 ~ 3391147 (+) True G142580
TU168854 lncRNA downstream 41653 3393772 ~ 3396067 (+) False LOC113523845
TU168850 lncRNA downstream 45551 3397670 ~ 3400823 (+) True G142576
TU168842 lncRNA downstream 63403 3415522 ~ 3434049 (+) False G142575
XM_034307287.1 mRNA upstream 129282 3146038 ~ 3153846 (+) True slc39a7
XM_026909916.2 mRNA upstream 159414 3118288 ~ 3123714 (+) True rps18
XM_026909910.2 mRNA upstream 221791 3055623 ~ 3061337 (+) True LOC113523850
XM_034307445.1 mRNA upstream 250602 3014082 ~ 3032526 (+) False LOC113523823
XM_026909905.2 mRNA downstream 10281 3362400 ~ 3368547 (+) True rps5
XM_034307220.1 mRNA downstream 32061 3384180 ~ 3396036 (+) False LOC113523845
XM_026909906.2 mRNA downstream 36144 3388263 ~ 3396036 (+) False LOC113523845
XM_026909875.2 mRNA downstream 350377 3702496 ~ 3816623 (+) True khdrbs3
XM_026909876.2 mRNA downstream 350377 3702496 ~ 3816623 (+) False khdrbs3
trnac-gca_12 other upstream 22183 3260874 ~ 3260945 (+) True trnac-gca_12
trnac-gca_11 other upstream 22716 3260341 ~ 3260412 (+) True trnac-gca_11
trnac-gca_10 other upstream 23249 3259808 ~ 3259879 (+) True trnac-gca_10
trnac-gca_9 other upstream 23867 3259190 ~ 3259261 (+) True trnac-gca_9
trnac-gca_8 other upstream 25613 3257444 ~ 3257515 (+) True trnac-gca_8
XR_003402470.1 other downstream 12096 3364215 ~ 3364348 (+) True LOC113523857
XR_003402472.2 other downstream 14006 3366125 ~ 3366258 (+) True LOC113523859
XR_003402471.1 other downstream 16086 3368205 ~ 3368338 (+) True LOC113523858
TU168853 other downstream 36134 3388253 ~ 3396067 (+) True LOC113523845
TU168849 other downstream 45551 3397670 ~ 3462171 (+) False G142576

Expression Profile